11 items (Jatropha curcas) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	JCGZ_19096	G_PROTEIN_RECEP_F2_4 domain-containing protein. (300 aa)
	JCGZ_17095	Uncharacterized protein. (863 aa)
	JCGZ_17883	RGS domain-containing protein. (202 aa)
	JCGZ_14699	AAA domain-containing protein. (656 aa)
	JCGZ_07588	Uncharacterized protein. (384 aa)
	JCGZ_16168	AAA domain-containing protein. (692 aa)
	JCGZ_07494	G protein gamma domain-containing protein. (245 aa)
	JCGZ_12306	Uncharacterized protein. (925 aa)
	JCGZ_12137	G protein gamma domain-containing protein. (116 aa)
	JCGZ_07954	PH domain-containing protein. (851 aa)
	JCGZ_10085	WD_REPEATS_REGION domain-containing protein. (377 aa)

Your Current Organism:

Jatropha curcas

NCBI taxonomy Id: 180498
Other names: J. curcas, Jatropha curcas L.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
JCGZ_07494	JCGZ_07588	A0A067KFZ1	A0A067KD02	G protein gamma domain-containing protein.	Uncharacterized protein.	0.601
JCGZ_07494	JCGZ_07954	A0A067KFZ1	A0A067KMS0	G protein gamma domain-containing protein.	PH domain-containing protein.	0.477
JCGZ_07494	JCGZ_10085	A0A067KFZ1	A0A067LN60	G protein gamma domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.589
JCGZ_07494	JCGZ_12137	A0A067KFZ1	A0A067KKQ0	G protein gamma domain-containing protein.	G protein gamma domain-containing protein.	0.587
JCGZ_07494	JCGZ_12306	A0A067KFZ1	A0A067KHW0	G protein gamma domain-containing protein.	Uncharacterized protein.	0.596
JCGZ_07494	JCGZ_17095	A0A067KFZ1	A0A067K2C2	G protein gamma domain-containing protein.	Uncharacterized protein.	0.477
JCGZ_07494	JCGZ_17883	A0A067KFZ1	A0A067K3C2	G protein gamma domain-containing protein.	RGS domain-containing protein.	0.567
JCGZ_07494	JCGZ_19096	A0A067KFZ1	A0A067JVL5	G protein gamma domain-containing protein.	G_PROTEIN_RECEP_F2_4 domain-containing protein.	0.464
JCGZ_07588	JCGZ_07494	A0A067KD02	A0A067KFZ1	Uncharacterized protein.	G protein gamma domain-containing protein.	0.601
JCGZ_07588	JCGZ_10085	A0A067KD02	A0A067LN60	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.949
JCGZ_07588	JCGZ_12137	A0A067KD02	A0A067KKQ0	Uncharacterized protein.	G protein gamma domain-containing protein.	0.595
JCGZ_07588	JCGZ_14699	A0A067KD02	A0A067K8C4	Uncharacterized protein.	AAA domain-containing protein.	0.580
JCGZ_07588	JCGZ_16168	A0A067KD02	A0A067KF53	Uncharacterized protein.	AAA domain-containing protein.	0.580
JCGZ_07588	JCGZ_17883	A0A067KD02	A0A067K3C2	Uncharacterized protein.	RGS domain-containing protein.	0.889
JCGZ_07588	JCGZ_19096	A0A067KD02	A0A067JVL5	Uncharacterized protein.	G_PROTEIN_RECEP_F2_4 domain-containing protein.	0.651
JCGZ_07954	JCGZ_07494	A0A067KMS0	A0A067KFZ1	PH domain-containing protein.	G protein gamma domain-containing protein.	0.477
JCGZ_07954	JCGZ_10085	A0A067KMS0	A0A067LN60	PH domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.934
JCGZ_07954	JCGZ_12137	A0A067KMS0	A0A067KKQ0	PH domain-containing protein.	G protein gamma domain-containing protein.	0.469
JCGZ_07954	JCGZ_14699	A0A067KMS0	A0A067K8C4	PH domain-containing protein.	AAA domain-containing protein.	0.580
JCGZ_07954	JCGZ_16168	A0A067KMS0	A0A067KF53	PH domain-containing protein.	AAA domain-containing protein.	0.580