7 items (Jatropha curcas) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	JCGZ_22878	Brix domain-containing protein. (313 aa)
	JCGZ_22454	Uncharacterized protein. (280 aa)
	JCGZ_18864	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (187 aa)
	JCGZ_13312	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (337 aa)
	JCGZ_06743	Brix domain-containing protein. (315 aa)
	JCGZ_01522	RRM domain-containing protein. (213 aa)
	JCGZ_16917	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (229 aa)

Your Current Organism:

Jatropha curcas

NCBI taxonomy Id: 180498
Other names: J. curcas, Jatropha curcas L.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
JCGZ_01522	JCGZ_06743	A0A067L9C9	A0A067KZN4	RRM domain-containing protein.	Brix domain-containing protein.	0.999
JCGZ_01522	JCGZ_13312	A0A067L9C9	A0A067K8F6	RRM domain-containing protein.	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	0.999
JCGZ_01522	JCGZ_16917	A0A067L9C9	A0A067LGD2	RRM domain-containing protein.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.998
JCGZ_01522	JCGZ_18864	A0A067L9C9	A0A067K7K4	RRM domain-containing protein.	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	0.999
JCGZ_01522	JCGZ_22454	A0A067L9C9	A0A067JTW5	RRM domain-containing protein.	Uncharacterized protein.	0.999
JCGZ_01522	JCGZ_22878	A0A067L9C9	A0A067JSR7	RRM domain-containing protein.	Brix domain-containing protein.	0.999
JCGZ_06743	JCGZ_01522	A0A067KZN4	A0A067L9C9	Brix domain-containing protein.	RRM domain-containing protein.	0.999
JCGZ_06743	JCGZ_13312	A0A067KZN4	A0A067K8F6	Brix domain-containing protein.	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	0.999
JCGZ_06743	JCGZ_16917	A0A067KZN4	A0A067LGD2	Brix domain-containing protein.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.999
JCGZ_06743	JCGZ_18864	A0A067KZN4	A0A067K7K4	Brix domain-containing protein.	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	0.998
JCGZ_06743	JCGZ_22454	A0A067KZN4	A0A067JTW5	Brix domain-containing protein.	Uncharacterized protein.	0.999
JCGZ_06743	JCGZ_22878	A0A067KZN4	A0A067JSR7	Brix domain-containing protein.	Brix domain-containing protein.	0.999
JCGZ_13312	JCGZ_01522	A0A067K8F6	A0A067L9C9	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	RRM domain-containing protein.	0.999
JCGZ_13312	JCGZ_06743	A0A067K8F6	A0A067KZN4	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	Brix domain-containing protein.	0.999
JCGZ_13312	JCGZ_16917	A0A067K8F6	A0A067LGD2	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.994
JCGZ_13312	JCGZ_18864	A0A067K8F6	A0A067K7K4	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	0.987
JCGZ_13312	JCGZ_22454	A0A067K8F6	A0A067JTW5	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	Uncharacterized protein.	0.996
JCGZ_13312	JCGZ_22878	A0A067K8F6	A0A067JSR7	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	Brix domain-containing protein.	0.988
JCGZ_16917	JCGZ_01522	A0A067LGD2	A0A067L9C9	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	RRM domain-containing protein.	0.998
JCGZ_16917	JCGZ_06743	A0A067LGD2	A0A067KZN4	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	Brix domain-containing protein.	0.999