18 items (Jatropha curcas) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	JCGZ_21442	Uncharacterized protein. (960 aa)
	JCGZ_03289	F-box domain-containing protein. (365 aa)
	JCGZ_25442	Uncharacterized protein. (545 aa)
	JCGZ_20558	BTB domain-containing protein. (665 aa)
	JCGZ_23933	Uncharacterized protein; Belongs to the terpene synthase family. (402 aa)
	JCGZ_26452	F-box domain-containing protein. (402 aa)
	JCGZ_17973	F-box domain-containing protein. (463 aa)
	JCGZ_06358	Uncharacterized protein. (525 aa)
	JCGZ_04715	Bet_v_1 domain-containing protein. (158 aa)
	JCGZ_11916	Uncharacterized protein. (421 aa)
	JCGZ_06214	Uncharacterized protein. (729 aa)
	JCGZ_04024	BTB domain-containing protein. (446 aa)
	JCGZ_05049	Phytocyanin domain-containing protein. (106 aa)
	JCGZ_04408	Uncharacterized protein. (444 aa)
	JCGZ_12939	Uncharacterized protein. (533 aa)
	JCGZ_10202	Uncharacterized protein. (580 aa)
	JCGZ_17377	Uncharacterized protein. (493 aa)
	JCGZ_11833	Uncharacterized protein. (444 aa)

Your Current Organism:

Jatropha curcas

NCBI taxonomy Id: 180498
Other names: J. curcas, Jatropha curcas L.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
JCGZ_03289	JCGZ_04024	A0A067JFQ1	A0A067KR24	F-box domain-containing protein.	BTB domain-containing protein.	0.487
JCGZ_03289	JCGZ_04408	A0A067JFQ1	A0A067KU18	F-box domain-containing protein.	Uncharacterized protein.	0.476
JCGZ_03289	JCGZ_04715	A0A067JFQ1	A0A067KPJ7	F-box domain-containing protein.	Bet_v_1 domain-containing protein.	0.439
JCGZ_03289	JCGZ_05049	A0A067JFQ1	A0A067KRY5	F-box domain-containing protein.	Phytocyanin domain-containing protein.	0.463
JCGZ_03289	JCGZ_06214	A0A067JFQ1	A0A067KQ97	F-box domain-containing protein.	Uncharacterized protein.	0.450
JCGZ_03289	JCGZ_06358	A0A067JFQ1	A0A067KNP7	F-box domain-containing protein.	Uncharacterized protein.	0.496
JCGZ_03289	JCGZ_10202	A0A067JFQ1	A0A067LD94	F-box domain-containing protein.	Uncharacterized protein.	0.478
JCGZ_03289	JCGZ_11833	A0A067JFQ1	A0A067LMA4	F-box domain-containing protein.	Uncharacterized protein.	0.530
JCGZ_03289	JCGZ_12939	A0A067JFQ1	A0A067LD93	F-box domain-containing protein.	Uncharacterized protein.	0.488
JCGZ_03289	JCGZ_17377	A0A067JFQ1	A0A067LLX6	F-box domain-containing protein.	Uncharacterized protein.	0.518
JCGZ_03289	JCGZ_17973	A0A067JFQ1	A0A067K3J1	F-box domain-containing protein.	F-box domain-containing protein.	0.479
JCGZ_03289	JCGZ_20558	A0A067JFQ1	A0A067JNE7	F-box domain-containing protein.	BTB domain-containing protein.	0.523
JCGZ_03289	JCGZ_21442	A0A067JFQ1	A0A067JAY3	F-box domain-containing protein.	Uncharacterized protein.	0.473
JCGZ_03289	JCGZ_23933	A0A067JFQ1	A0A067JSJ6	F-box domain-containing protein.	Uncharacterized protein; Belongs to the terpene synthase family.	0.512
JCGZ_03289	JCGZ_25442	A0A067JFQ1	A0A067JL68	F-box domain-containing protein.	Uncharacterized protein.	0.503
JCGZ_04024	JCGZ_03289	A0A067KR24	A0A067JFQ1	BTB domain-containing protein.	F-box domain-containing protein.	0.487
JCGZ_04024	JCGZ_04408	A0A067KR24	A0A067KU18	BTB domain-containing protein.	Uncharacterized protein.	0.451
JCGZ_04024	JCGZ_04715	A0A067KR24	A0A067KPJ7	BTB domain-containing protein.	Bet_v_1 domain-containing protein.	0.430
JCGZ_04024	JCGZ_05049	A0A067KR24	A0A067KRY5	BTB domain-containing protein.	Phytocyanin domain-containing protein.	0.499
JCGZ_04024	JCGZ_06214	A0A067KR24	A0A067KQ97	BTB domain-containing protein.	Uncharacterized protein.	0.420