(6 nodes) Mixed, incl. Centromere complex assembly, and Regulation of NF-kappa B signaling network (Jatropha curcas)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	JCGZ_21768	Uncharacterized protein. (607 aa)
	JCGZ_17676	Uncharacterized protein. (333 aa)
	JCGZ_20973	Uncharacterized protein. (386 aa)
	JCGZ_07017	Uncharacterized protein. (344 aa)
	JCGZ_08213	Uncharacterized protein. (353 aa)
	JCGZ_17268	Uncharacterized protein. (263 aa)

Your Current Organism:

Jatropha curcas

NCBI taxonomy Id: 180498
Other names: J. curcas, Jatropha curcas L.

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
JCGZ_07017	JCGZ_08213	A0A067KB43	A0A067KLB3	Uncharacterized protein.	Uncharacterized protein.	0.569
JCGZ_07017	JCGZ_17268	A0A067KB43	A0A067LB17	Uncharacterized protein.	Uncharacterized protein.	0.568
JCGZ_07017	JCGZ_17676	A0A067KB43	A0A067JUL4	Uncharacterized protein.	Uncharacterized protein.	0.569
JCGZ_07017	JCGZ_20973	A0A067KB43	A0A067JW30	Uncharacterized protein.	Uncharacterized protein.	0.569
JCGZ_07017	JCGZ_21768	A0A067KB43	A0A067JBY5	Uncharacterized protein.	Uncharacterized protein.	0.564
JCGZ_08213	JCGZ_07017	A0A067KLB3	A0A067KB43	Uncharacterized protein.	Uncharacterized protein.	0.569
JCGZ_08213	JCGZ_17268	A0A067KLB3	A0A067LB17	Uncharacterized protein.	Uncharacterized protein.	0.568
JCGZ_08213	JCGZ_17676	A0A067KLB3	A0A067JUL4	Uncharacterized protein.	Uncharacterized protein.	0.571
JCGZ_08213	JCGZ_20973	A0A067KLB3	A0A067JW30	Uncharacterized protein.	Uncharacterized protein.	0.571
JCGZ_08213	JCGZ_21768	A0A067KLB3	A0A067JBY5	Uncharacterized protein.	Uncharacterized protein.	0.564
JCGZ_17268	JCGZ_07017	A0A067LB17	A0A067KB43	Uncharacterized protein.	Uncharacterized protein.	0.568
JCGZ_17268	JCGZ_08213	A0A067LB17	A0A067KLB3	Uncharacterized protein.	Uncharacterized protein.	0.568
JCGZ_17268	JCGZ_17676	A0A067LB17	A0A067JUL4	Uncharacterized protein.	Uncharacterized protein.	0.568
JCGZ_17268	JCGZ_20973	A0A067LB17	A0A067JW30	Uncharacterized protein.	Uncharacterized protein.	0.568
JCGZ_17268	JCGZ_21768	A0A067LB17	A0A067JBY5	Uncharacterized protein.	Uncharacterized protein.	0.557
JCGZ_17676	JCGZ_07017	A0A067JUL4	A0A067KB43	Uncharacterized protein.	Uncharacterized protein.	0.569
JCGZ_17676	JCGZ_08213	A0A067JUL4	A0A067KLB3	Uncharacterized protein.	Uncharacterized protein.	0.571
JCGZ_17676	JCGZ_17268	A0A067JUL4	A0A067LB17	Uncharacterized protein.	Uncharacterized protein.	0.568
JCGZ_17676	JCGZ_20973	A0A067JUL4	A0A067JW30	Uncharacterized protein.	Uncharacterized protein.	0.571
JCGZ_17676	JCGZ_21768	A0A067JUL4	A0A067JBY5	Uncharacterized protein.	Uncharacterized protein.	0.564