58 items (Jatropha curcas) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	JCGZ_21417	DUF3700 domain-containing protein. (255 aa)
	JCGZ_26157	Uncharacterized protein. (372 aa)
	JCGZ_25949	RRM domain-containing protein. (198 aa)
	JCGZ_23174	X8 domain-containing protein. (599 aa)
	JCGZ_25745	Nuclear cap-binding protein subunit 2. (252 aa)
	JCGZ_03043	RRM domain-containing protein. (212 aa)
	JCGZ_26326	RRM domain-containing protein. (223 aa)
	JCGZ_25965	MIF4G domain-containing protein. (868 aa)
	JCGZ_17720	Uncharacterized protein. (184 aa)
	JCGZ_17730	Uncharacterized protein. (969 aa)
	JCGZ_23302	Uncharacterized protein. (313 aa)
	JCGZ_13928	Uncharacterized protein. (300 aa)
	JCGZ_16426	Uncharacterized protein. (297 aa)
	JCGZ_18313	Protein kinase domain-containing protein. (1047 aa)
	JCGZ_20690	Uncharacterized protein. (157 aa)
	JCGZ_19569	Uncharacterized protein. (258 aa)
	JCGZ_22501	RRM domain-containing protein. (278 aa)
	JCGZ_12252	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (588 aa)
	JCGZ_14221	Uncharacterized protein. (246 aa)
	JCGZ_13302	Uncharacterized protein. (532 aa)
	JCGZ_14641	Uncharacterized protein. (149 aa)
	JCGZ_13089	Uncharacterized protein. (611 aa)
	JCGZ_16438	Uncharacterized protein. (205 aa)
	JCGZ_07422	Uncharacterized protein. (370 aa)
	JCGZ_11250	Uncharacterized protein. (313 aa)
	JCGZ_17056	RRM domain-containing protein. (256 aa)
	JCGZ_07034	Uncharacterized protein. (179 aa)
	JCGZ_07174	Uncharacterized protein. (428 aa)
	JCGZ_08791	Uncharacterized protein. (689 aa)
	JCGZ_06153	Uncharacterized protein. (428 aa)
	JCGZ_04800	Tho2 domain-containing protein. (1024 aa)
	JCGZ_11228	Protein kinase domain-containing protein. (533 aa)
	JCGZ_07695	RNA_GG_bind domain-containing protein. (252 aa)
	JCGZ_04801	Uncharacterized protein. (680 aa)
	JCGZ_09393	B30.2/SPRY domain-containing protein. (1275 aa)
	JCGZ_04071	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (592 aa)
	JCGZ_02045	RRM domain-containing protein. (258 aa)
	JCGZ_24561	Uncharacterized protein. (608 aa)
	JCGZ_24915	RRM domain-containing protein. (197 aa)
	JCGZ_08020	Uncharacterized protein. (280 aa)
	JCGZ_02236	DUF3700 domain-containing protein. (249 aa)
	JCGZ_01899	RRM domain-containing protein. (255 aa)
	JCGZ_00298	Uncharacterized protein. (804 aa)
	JCGZ_04254	Uncharacterized protein. (808 aa)
	JCGZ_23697	Uncharacterized protein. (312 aa)
	JCGZ_23773	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (574 aa)
	JCGZ_23824	WD_REPEATS_REGION domain-containing protein. (313 aa)
	JCGZ_24208	Uncharacterized protein. (410 aa)
	JCGZ_22393	RRM domain-containing protein. (264 aa)
	JCGZ_02544	Uncharacterized protein. (240 aa)
	JCGZ_23845	C2H2-type domain-containing protein. (742 aa)
	JCGZ_02367	Uncharacterized protein. (904 aa)
	JCGZ_01451	RRM domain-containing protein. (280 aa)
	JCGZ_01496	RRM domain-containing protein. (247 aa)
	JCGZ_05675	RRM domain-containing protein. (248 aa)
	JCGZ_02940	PWI domain-containing protein. (870 aa)
	JCGZ_16907	Pinin_SDK_memA domain-containing protein. (428 aa)
	JCGZ_24108	SAP domain-containing protein. (707 aa)

Your Current Organism:

Jatropha curcas

NCBI taxonomy Id: 180498
Other names: J. curcas, Jatropha curcas L.

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
JCGZ_00298	JCGZ_01496	A0A067L1Z4	A0A067L956	Uncharacterized protein.	RRM domain-containing protein.	0.457
JCGZ_00298	JCGZ_02236	A0A067L1Z4	A0A067KZ77	Uncharacterized protein.	DUF3700 domain-containing protein.	0.724
JCGZ_00298	JCGZ_02367	A0A067L1Z4	A0A067L8D4	Uncharacterized protein.	Uncharacterized protein.	0.714
JCGZ_00298	JCGZ_02940	A0A067L1Z4	A0A067LCL6	Uncharacterized protein.	PWI domain-containing protein.	0.591
JCGZ_00298	JCGZ_04071	A0A067L1Z4	A0A067KUW0	Uncharacterized protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.724
JCGZ_00298	JCGZ_04254	A0A067L1Z4	A0A067L2L0	Uncharacterized protein.	Uncharacterized protein.	0.484
JCGZ_00298	JCGZ_04800	A0A067L1Z4	A0A067KPU6	Uncharacterized protein.	Tho2 domain-containing protein.	0.429
JCGZ_00298	JCGZ_04801	A0A067L1Z4	A0A067KT72	Uncharacterized protein.	Uncharacterized protein.	0.429
JCGZ_00298	JCGZ_05675	A0A067L1Z4	A0A067LAK2	Uncharacterized protein.	RRM domain-containing protein.	0.457
JCGZ_00298	JCGZ_06153	A0A067L1Z4	A0A067KLR9	Uncharacterized protein.	Uncharacterized protein.	0.471
JCGZ_00298	JCGZ_07034	A0A067L1Z4	A0A067KEM8	Uncharacterized protein.	Uncharacterized protein.	0.578
JCGZ_00298	JCGZ_07174	A0A067L1Z4	A0A067KF23	Uncharacterized protein.	Uncharacterized protein.	0.471
JCGZ_00298	JCGZ_07422	A0A067L1Z4	A0A067KCB0	Uncharacterized protein.	Uncharacterized protein.	0.418
JCGZ_00298	JCGZ_08791	A0A067L1Z4	A0A067KJ41	Uncharacterized protein.	Uncharacterized protein.	0.610
JCGZ_00298	JCGZ_12252	A0A067L1Z4	A0A067K6F1	Uncharacterized protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.724
JCGZ_00298	JCGZ_13928	A0A067L1Z4	A0A067JW83	Uncharacterized protein.	Uncharacterized protein.	0.629
JCGZ_00298	JCGZ_14221	A0A067L1Z4	A0A067K840	Uncharacterized protein.	Uncharacterized protein.	0.610
JCGZ_00298	JCGZ_14641	A0A067L1Z4	A0A067K9B5	Uncharacterized protein.	Uncharacterized protein.	0.515
JCGZ_00298	JCGZ_16426	A0A067L1Z4	A0A067JYR7	Uncharacterized protein.	Uncharacterized protein.	0.578
JCGZ_00298	JCGZ_16438	A0A067L1Z4	A0A067KB47	Uncharacterized protein.	Uncharacterized protein.	0.500