(50 nodes) Mixed, incl. Stilbenoid, diarylheptanoid and gingerol biosynthesis, and 4-coumarate-CoA ligase activity network (Jatropha curcas)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	JCGZ_00555	Uncharacterized protein. (563 aa)
	JCGZ_23996	Uncharacterized protein. (246 aa)
	JCGZ_17899	Uncharacterized protein. (432 aa)
	JCGZ_17901	Uncharacterized protein. (438 aa)
	JCGZ_18076	Uncharacterized protein. (450 aa)
	JCGZ_16521	Phenylalanine ammonia-lyase. (713 aa)
	JCGZ_11342	Uncharacterized protein. (454 aa)
	JCGZ_11328	Uncharacterized protein. (559 aa)
	JCGZ_17972	Uncharacterized protein. (541 aa)
	JCGZ_13936	Hydrolase_4 domain-containing protein. (345 aa)
	JCGZ_19778	Uncharacterized protein; Belongs to the cytochrome P450 family. (531 aa)
	JCGZ_12983	Hydrolase_4 domain-containing protein. (380 aa)
	JCGZ_18336	Hydrolase_4 domain-containing protein. (406 aa)
	JCGZ_07223	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family. (504 aa)
	PAL4	Phenylalanine ammonia-lyase. (703 aa)
	JCGZ_12170	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family. (367 aa)
	JCGZ_18389	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family. (365 aa)
	JCGZ_16164	Uncharacterized protein. (437 aa)
	JCGZ_16163	Uncharacterized protein. (451 aa)
	JCGZ_07224	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family. (501 aa)
	JCGZ_11340	Uncharacterized protein. (423 aa)
	JCGZ_08680	Uncharacterized protein. (543 aa)
	JCGZ_08113	Uncharacterized protein. (696 aa)
	JCGZ_10407	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family. (365 aa)
	JCGZ_04784	Uncharacterized protein. (233 aa)
	JCGZ_07320	Uncharacterized protein. (235 aa)
	JCGZ_04785	Uncharacterized protein. (235 aa)
	JCGZ_11227	Uncharacterized protein. (439 aa)
	JCGZ_04045	Uncharacterized protein. (437 aa)
	JCGZ_04050	Uncharacterized protein. (424 aa)
	JCGZ_04786	Uncharacterized protein. (235 aa)
	JCGZ_10599	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family. (365 aa)
	JCGZ_04051	Uncharacterized protein. (429 aa)
	JCGZ_10726	Uncharacterized protein; Belongs to the cytochrome P450 family. (508 aa)
	JCGZ_08679	Uncharacterized protein. (543 aa)
	JCGZ_24505	Uncharacterized protein. (290 aa)
	JCGZ_24586	Methyltransf_2 domain-containing protein. (265 aa)
	JCGZ_06210	Hydrolase_4 domain-containing protein. (330 aa)
	JCGZ_06898	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family. (365 aa)
	JCGZ_26971	Uncharacterized protein. (431 aa)
	JCGZ_05393	Uncharacterized protein. (443 aa)
	JCGZ_05394	Uncharacterized protein. (443 aa)
	JCGZ_05454	Uncharacterized protein. (542 aa)
	JCGZ_17318	Uncharacterized protein; Belongs to the cytochrome P450 family. (505 aa)
	JCGZ_26923	Uncharacterized protein. (543 aa)
	JCGZ_26997	Epimerase domain-containing protein. (338 aa)
	JCGZ_20064	Phenylalanine ammonia-lyase. (712 aa)
	JCGZ_06630	Hydrolase_4 domain-containing protein. (315 aa)
	JCGZ_12199	Uncharacterized protein. (439 aa)
	JCGZ_18323	Cinnamoyl-CoA reductase. (320 aa)

Your Current Organism:

Jatropha curcas

NCBI taxonomy Id: 180498
Other names: J. curcas, Jatropha curcas L.

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
JCGZ_00555	JCGZ_04045	A0A067JG74	A0A067KRE9	Uncharacterized protein.	Uncharacterized protein.	0.762
JCGZ_00555	JCGZ_04050	A0A067JG74	A0A067KRF7	Uncharacterized protein.	Uncharacterized protein.	0.684
JCGZ_00555	JCGZ_04051	A0A067JG74	A0A067KUT7	Uncharacterized protein.	Uncharacterized protein.	0.684
JCGZ_00555	JCGZ_04784	A0A067JG74	A0A067KPJ9	Uncharacterized protein.	Uncharacterized protein.	0.726
JCGZ_00555	JCGZ_04785	A0A067JG74	A0A067KPS9	Uncharacterized protein.	Uncharacterized protein.	0.726
JCGZ_00555	JCGZ_04786	A0A067JG74	A0A067KT49	Uncharacterized protein.	Uncharacterized protein.	0.726
JCGZ_00555	JCGZ_05393	A0A067JG74	A0A067L631	Uncharacterized protein.	Uncharacterized protein.	0.684
JCGZ_00555	JCGZ_05394	A0A067JG74	A0A067L680	Uncharacterized protein.	Uncharacterized protein.	0.684
JCGZ_00555	JCGZ_06210	A0A067JG74	A0A067KZ86	Uncharacterized protein.	Hydrolase_4 domain-containing protein.	0.799
JCGZ_00555	JCGZ_06630	A0A067JG74	A0A067LNR6	Uncharacterized protein.	Hydrolase_4 domain-containing protein.	0.844
JCGZ_00555	JCGZ_06898	A0A067JG74	A0A067KZJ4	Uncharacterized protein.	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family.	0.731
JCGZ_00555	JCGZ_07223	A0A067JG74	A0A067KBW8	Uncharacterized protein.	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.976
JCGZ_00555	JCGZ_07224	A0A067JG74	A0A067KF88	Uncharacterized protein.	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.976
JCGZ_00555	JCGZ_07320	A0A067JG74	A0A067KPN2	Uncharacterized protein.	Uncharacterized protein.	0.734
JCGZ_00555	JCGZ_08113	A0A067JG74	A0A067KL32	Uncharacterized protein.	Uncharacterized protein.	0.684
JCGZ_00555	JCGZ_10407	A0A067JG74	A0A067KLV9	Uncharacterized protein.	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family.	0.731
JCGZ_00555	JCGZ_10599	A0A067JG74	A0A067KUA9	Uncharacterized protein.	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family.	0.731
JCGZ_00555	JCGZ_10726	A0A067JG74	A0A067KVB4	Uncharacterized protein.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.614
JCGZ_00555	JCGZ_11227	A0A067JG74	A0A067KR94	Uncharacterized protein.	Uncharacterized protein.	0.684
JCGZ_00555	JCGZ_11340	A0A067JG74	A0A067KGJ1	Uncharacterized protein.	Uncharacterized protein.	0.684