15 items (Jatropha curcas) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	JCGZ_21937	Mitochondrial Rho GTPase. (643 aa)
	JCGZ_23356	Mitochondrial Rho GTPase. (652 aa)
	JCGZ_21696	Uncharacterized protein. (276 aa)
	JCGZ_21935	G domain-containing protein. (920 aa)
	JCGZ_17632	Uncharacterized protein. (106 aa)
	JCGZ_12533	Uncharacterized protein. (276 aa)
	JCGZ_11584	Uncharacterized protein. (249 aa)
	JCGZ_12866	Uncharacterized protein. (101 aa)
	JCGZ_24475	Uncharacterized protein. (318 aa)
	JCGZ_23905	Bac_surface_Ag domain-containing protein. (360 aa)
	JCGZ_16031	Uncharacterized protein. (277 aa)
	JCGZ_04540	Uncharacterized protein. (56 aa)
	JCGZ_04566	Uncharacterized protein. (327 aa)
	JCGZ_09722	Uncharacterized protein. (274 aa)
	JCGZ_01224	POTRA domain-containing protein. (523 aa)

Your Current Organism:

Jatropha curcas

NCBI taxonomy Id: 180498
Other names: J. curcas, Jatropha curcas L.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
JCGZ_01224	JCGZ_04540	A0A067LKA6	A0A067LDP6	POTRA domain-containing protein.	Uncharacterized protein.	0.985
JCGZ_01224	JCGZ_04566	A0A067LKA6	A0A067LDZ2	POTRA domain-containing protein.	Uncharacterized protein.	0.985
JCGZ_01224	JCGZ_09722	A0A067LKA6	A0A067LDZ7	POTRA domain-containing protein.	Uncharacterized protein.	0.690
JCGZ_01224	JCGZ_11584	A0A067LKA6	A0A067K8A1	POTRA domain-containing protein.	Uncharacterized protein.	0.690
JCGZ_01224	JCGZ_12533	A0A067LKA6	A0A067K7H3	POTRA domain-containing protein.	Uncharacterized protein.	0.690
JCGZ_01224	JCGZ_12866	A0A067LKA6	A0A067KB20	POTRA domain-containing protein.	Uncharacterized protein.	0.912
JCGZ_01224	JCGZ_16031	A0A067LKA6	A0A067LBZ3	POTRA domain-containing protein.	Uncharacterized protein.	0.690
JCGZ_01224	JCGZ_17632	A0A067LKA6	A0A067K3T4	POTRA domain-containing protein.	Uncharacterized protein.	0.912
JCGZ_01224	JCGZ_21696	A0A067LKA6	A0A067JML0	POTRA domain-containing protein.	Uncharacterized protein.	0.690
JCGZ_01224	JCGZ_24475	A0A067LKA6	A0A067KW88	POTRA domain-containing protein.	Uncharacterized protein.	0.977
JCGZ_04540	JCGZ_01224	A0A067LDP6	A0A067LKA6	Uncharacterized protein.	POTRA domain-containing protein.	0.985
JCGZ_04540	JCGZ_12866	A0A067LDP6	A0A067KB20	Uncharacterized protein.	Uncharacterized protein.	0.685
JCGZ_04540	JCGZ_17632	A0A067LDP6	A0A067K3T4	Uncharacterized protein.	Uncharacterized protein.	0.685
JCGZ_04540	JCGZ_23905	A0A067LDP6	A0A067L6U1	Uncharacterized protein.	Bac_surface_Ag domain-containing protein.	0.948
JCGZ_04540	JCGZ_24475	A0A067LDP6	A0A067KW88	Uncharacterized protein.	Uncharacterized protein.	0.964
JCGZ_04566	JCGZ_01224	A0A067LDZ2	A0A067LKA6	Uncharacterized protein.	POTRA domain-containing protein.	0.985
JCGZ_04566	JCGZ_12866	A0A067LDZ2	A0A067KB20	Uncharacterized protein.	Uncharacterized protein.	0.685
JCGZ_04566	JCGZ_17632	A0A067LDZ2	A0A067K3T4	Uncharacterized protein.	Uncharacterized protein.	0.685
JCGZ_04566	JCGZ_23905	A0A067LDZ2	A0A067L6U1	Uncharacterized protein.	Bac_surface_Ag domain-containing protein.	0.948
JCGZ_04566	JCGZ_24475	A0A067LDZ2	A0A067KW88	Uncharacterized protein.	Uncharacterized protein.	0.964