13 items (Jatropha curcas) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	JCGZ_21423	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (450 aa)
	JCGZ_05295	Helicase ATP-binding domain-containing protein. (758 aa)
	JCGZ_20740	Uncharacterized protein. (70 aa)
	JCGZ_10470	HTH TFE/IIEalpha-type domain-containing protein. (473 aa)
	JCGZ_13184	Uncharacterized protein. (599 aa)
	JCGZ_12081	Uncharacterized protein. (296 aa)
	JCGZ_15913	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (106 aa)
	JCGZ_02941	Uncharacterized protein. (407 aa)
	JCGZ_04068	MAT1 domain-containing protein. (180 aa)
	JCGZ_03950	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (533 aa)
	JCGZ_07963	HTH TFE/IIEalpha-type domain-containing protein. (474 aa)
	JCGZ_05562	C2H2-type domain-containing protein. (208 aa)
	JHL18I08.10	JHL18I08.10 protein. (262 aa)

Your Current Organism:

Jatropha curcas

NCBI taxonomy Id: 180498
Other names: J. curcas, Jatropha curcas L.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
JCGZ_02941	JCGZ_03950	A0A067L1A3	A0A067L7G8	Uncharacterized protein.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.969
JCGZ_02941	JCGZ_04068	A0A067L1A3	A0A067L2M4	Uncharacterized protein.	MAT1 domain-containing protein.	0.955
JCGZ_02941	JCGZ_05295	A0A067L1A3	A0A067JKA4	Uncharacterized protein.	Helicase ATP-binding domain-containing protein.	0.952
JCGZ_02941	JCGZ_05562	A0A067L1A3	A0A067LHM1	Uncharacterized protein.	C2H2-type domain-containing protein.	0.990
JCGZ_02941	JCGZ_07963	A0A067L1A3	A0A067LEP3	Uncharacterized protein.	HTH TFE/IIEalpha-type domain-containing protein.	0.975
JCGZ_02941	JCGZ_10470	A0A067L1A3	A0A067KL60	Uncharacterized protein.	HTH TFE/IIEalpha-type domain-containing protein.	0.975
JCGZ_02941	JCGZ_12081	A0A067L1A3	A0A067KLW9	Uncharacterized protein.	Uncharacterized protein.	0.979
JCGZ_02941	JCGZ_13184	A0A067L1A3	A0A067KLF7	Uncharacterized protein.	Uncharacterized protein.	0.980
JCGZ_02941	JCGZ_15913	A0A067L1A3	A0A067KZ69	Uncharacterized protein.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.995
JCGZ_02941	JCGZ_20740	A0A067L1A3	A0A067K1B6	Uncharacterized protein.	Uncharacterized protein.	0.916
JCGZ_02941	JCGZ_21423	A0A067L1A3	A0A067JB09	Uncharacterized protein.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.990
JCGZ_02941	JHL18I08.10	A0A067L1A3	E6NU66	Uncharacterized protein.	JHL18I08.10 protein.	0.977
JCGZ_03950	JCGZ_02941	A0A067L7G8	A0A067L1A3	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Uncharacterized protein.	0.969
JCGZ_03950	JCGZ_04068	A0A067L7G8	A0A067L2M4	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	MAT1 domain-containing protein.	0.917
JCGZ_03950	JCGZ_05295	A0A067L7G8	A0A067JKA4	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Helicase ATP-binding domain-containing protein.	0.916
JCGZ_03950	JCGZ_05562	A0A067L7G8	A0A067LHM1	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	C2H2-type domain-containing protein.	0.970
JCGZ_03950	JCGZ_07963	A0A067L7G8	A0A067LEP3	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	HTH TFE/IIEalpha-type domain-containing protein.	0.959
JCGZ_03950	JCGZ_10470	A0A067L7G8	A0A067KL60	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	HTH TFE/IIEalpha-type domain-containing protein.	0.960
JCGZ_03950	JCGZ_12081	A0A067L7G8	A0A067KLW9	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Uncharacterized protein.	0.972
JCGZ_03950	JCGZ_13184	A0A067L7G8	A0A067KLF7	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Uncharacterized protein.	0.977