40 items (Jatropha curcas) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	JCGZ_21437	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (841 aa)
	JCGZ_21409	Plus3 domain-containing protein. (658 aa)
	JCGZ_21419	Uncharacterized protein. (702 aa)
	JCGZ_23181	Uncharacterized protein. (1076 aa)
	JCGZ_20513	Uncharacterized protein. (679 aa)
	JCGZ_20677	Uncharacterized protein. (942 aa)
	JCGZ_03305	Uncharacterized protein. (266 aa)
	JCGZ_23577	RPOL4c domain-containing protein. (164 aa)
	JCGZ_18978	Uncharacterized protein; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (255 aa)
	JCGZ_13730	Uncharacterized protein. (206 aa)
	JCGZ_11708	Uncharacterized protein. (631 aa)
	JCGZ_13146	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (641 aa)
	JCGZ_19328	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1612 aa)
	JCGZ_16173	Uncharacterized protein. (1790 aa)
	JCGZ_09190	RNA_pol_L_2 domain-containing protein. (170 aa)
	JCGZ_09472	TFIIS N-terminal domain-containing protein. (349 aa)
	JCGZ_08747	Spt4 domain-containing protein. (158 aa)
	JCGZ_07086	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1209 aa)
	JCGZ_05341	RTR1-type domain-containing protein. (654 aa)
	JCGZ_07475	TPR_REGION domain-containing protein. (1066 aa)
	JCGZ_08983	RPOL4c domain-containing protein. (194 aa)
	JCGZ_10526	SHS2_Rpb7-N domain-containing protein. (176 aa)
	JCGZ_24615	Uncharacterized protein. (1051 aa)
	JCGZ_01859	RPOLA_N domain-containing protein. (1378 aa)
	JCGZ_23778	Uncharacterized protein. (191 aa)
	JCGZ_23918	Uncharacterized protein. (410 aa)
	JCGZ_25198	RNA_pol_Rpb2_6 domain-containing protein. (152 aa)
	JCGZ_25243	Transcription elongation factor SPT5. (1046 aa)
	JCGZ_02928	Uncharacterized protein. (176 aa)
	JCGZ_22328	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1546 aa)
	JCGZ_05743	Uncharacterized protein. (109 aa)
	JCGZ_16325	Uncharacterized protein. (80 aa)
	JCGZ_02197	CDC73_C domain-containing protein. (127 aa)
	JCGZ_24859	Uncharacterized protein. (515 aa)
	JCGZ_24513	Uncharacterized protein. (227 aa)
	JCGZ_24528	RPOLA_N domain-containing protein. (1821 aa)
	JCGZ_09726	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (450 aa)
	JCGZ_06535	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family. (104 aa)
	JCGZ_02409	Uncharacterized protein. (647 aa)
	JCGZ_22125	RPOLD domain-containing protein. (317 aa)

Your Current Organism:

Jatropha curcas

NCBI taxonomy Id: 180498
Other names: J. curcas, Jatropha curcas L.

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
JCGZ_01859	JCGZ_02197	A0A067L0S8	A0A067L814	RPOLA_N domain-containing protein.	CDC73_C domain-containing protein.	0.543
JCGZ_01859	JCGZ_02409	A0A067L0S8	A0A067LHV8	RPOLA_N domain-containing protein.	Uncharacterized protein.	0.682
JCGZ_01859	JCGZ_02928	A0A067L0S8	A0A067L4T0	RPOLA_N domain-containing protein.	Uncharacterized protein.	0.699
JCGZ_01859	JCGZ_03305	A0A067L0S8	A0A067JQ41	RPOLA_N domain-containing protein.	Uncharacterized protein.	0.684
JCGZ_01859	JCGZ_05341	A0A067L0S8	A0A067KP41	RPOLA_N domain-containing protein.	RTR1-type domain-containing protein.	0.727
JCGZ_01859	JCGZ_05743	A0A067L0S8	A0A067L757	RPOLA_N domain-containing protein.	Uncharacterized protein.	0.679
JCGZ_01859	JCGZ_06535	A0A067L0S8	A0A067LEF4	RPOLA_N domain-containing protein.	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.	0.724
JCGZ_01859	JCGZ_07086	A0A067L0S8	A0A067KMJ5	RPOLA_N domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.755
JCGZ_01859	JCGZ_07475	A0A067L0S8	A0A067KQ03	RPOLA_N domain-containing protein.	TPR_REGION domain-containing protein.	0.637
JCGZ_01859	JCGZ_08747	A0A067L0S8	A0A067KM71	RPOLA_N domain-containing protein.	Spt4 domain-containing protein.	0.724
JCGZ_01859	JCGZ_08983	A0A067L0S8	A0A067KTD9	RPOLA_N domain-containing protein.	RPOL4c domain-containing protein.	0.735
JCGZ_01859	JCGZ_09190	A0A067L0S8	A0A067KFJ8	RPOLA_N domain-containing protein.	RNA_pol_L_2 domain-containing protein.	0.840
JCGZ_01859	JCGZ_09472	A0A067L0S8	A0A067KK05	RPOLA_N domain-containing protein.	TFIIS N-terminal domain-containing protein.	0.684
JCGZ_01859	JCGZ_09726	A0A067L0S8	A0A067LAP1	RPOLA_N domain-containing protein.	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	0.707
JCGZ_01859	JCGZ_10526	A0A067L0S8	A0A067KVA5	RPOLA_N domain-containing protein.	SHS2_Rpb7-N domain-containing protein.	0.699
JCGZ_01859	JCGZ_11708	A0A067L0S8	A0A067K5D8	RPOLA_N domain-containing protein.	Uncharacterized protein.	0.614
JCGZ_01859	JCGZ_13146	A0A067L0S8	A0A067K8N4	RPOLA_N domain-containing protein.	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	0.707
JCGZ_01859	JCGZ_13730	A0A067L0S8	A0A067K3V6	RPOLA_N domain-containing protein.	Uncharacterized protein.	0.744
JCGZ_01859	JCGZ_16173	A0A067L0S8	A0A067KF58	RPOLA_N domain-containing protein.	Uncharacterized protein.	0.683
JCGZ_01859	JCGZ_16325	A0A067L0S8	A0A067L7U6	RPOLA_N domain-containing protein.	Uncharacterized protein.	0.699