5 items (Jatropha curcas) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	JCGZ_21409	Plus3 domain-containing protein. (658 aa)
	JCGZ_11708	Uncharacterized protein. (631 aa)
	JCGZ_07475	TPR_REGION domain-containing protein. (1066 aa)
	JCGZ_02197	CDC73_C domain-containing protein. (127 aa)
	JCGZ_24859	Uncharacterized protein. (515 aa)

Your Current Organism:

Jatropha curcas

NCBI taxonomy Id: 180498
Other names: J. curcas, Jatropha curcas L.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
JCGZ_02197	JCGZ_07475	A0A067L814	A0A067KQ03	CDC73_C domain-containing protein.	TPR_REGION domain-containing protein.	0.988
JCGZ_02197	JCGZ_11708	A0A067L814	A0A067K5D8	CDC73_C domain-containing protein.	Uncharacterized protein.	0.992
JCGZ_02197	JCGZ_21409	A0A067L814	A0A067JDU6	CDC73_C domain-containing protein.	Plus3 domain-containing protein.	0.976
JCGZ_02197	JCGZ_24859	A0A067L814	A0A067L8N5	CDC73_C domain-containing protein.	Uncharacterized protein.	0.991
JCGZ_07475	JCGZ_02197	A0A067KQ03	A0A067L814	TPR_REGION domain-containing protein.	CDC73_C domain-containing protein.	0.988
JCGZ_07475	JCGZ_11708	A0A067KQ03	A0A067K5D8	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.993
JCGZ_07475	JCGZ_21409	A0A067KQ03	A0A067JDU6	TPR_REGION domain-containing protein.	Plus3 domain-containing protein.	0.986
JCGZ_07475	JCGZ_24859	A0A067KQ03	A0A067L8N5	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.994
JCGZ_11708	JCGZ_02197	A0A067K5D8	A0A067L814	Uncharacterized protein.	CDC73_C domain-containing protein.	0.992
JCGZ_11708	JCGZ_07475	A0A067K5D8	A0A067KQ03	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.993
JCGZ_11708	JCGZ_21409	A0A067K5D8	A0A067JDU6	Uncharacterized protein.	Plus3 domain-containing protein.	0.985
JCGZ_11708	JCGZ_24859	A0A067K5D8	A0A067L8N5	Uncharacterized protein.	Uncharacterized protein.	0.997
JCGZ_21409	JCGZ_02197	A0A067JDU6	A0A067L814	Plus3 domain-containing protein.	CDC73_C domain-containing protein.	0.976
JCGZ_21409	JCGZ_07475	A0A067JDU6	A0A067KQ03	Plus3 domain-containing protein.	TPR_REGION domain-containing protein.	0.986
JCGZ_21409	JCGZ_11708	A0A067JDU6	A0A067K5D8	Plus3 domain-containing protein.	Uncharacterized protein.	0.985
JCGZ_21409	JCGZ_24859	A0A067JDU6	A0A067L8N5	Plus3 domain-containing protein.	Uncharacterized protein.	0.984
JCGZ_24859	JCGZ_02197	A0A067L8N5	A0A067L814	Uncharacterized protein.	CDC73_C domain-containing protein.	0.991
JCGZ_24859	JCGZ_07475	A0A067L8N5	A0A067KQ03	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.994
JCGZ_24859	JCGZ_11708	A0A067L8N5	A0A067K5D8	Uncharacterized protein.	Uncharacterized protein.	0.997
JCGZ_24859	JCGZ_21409	A0A067L8N5	A0A067JDU6	Uncharacterized protein.	Plus3 domain-containing protein.	0.984