28 items (Jatropha curcas) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	JCGZ_05617	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1275 aa)
	JCGZ_21833	Uncharacterized protein. (193 aa)
	JCGZ_26102	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (529 aa)
	JCGZ_20677	Uncharacterized protein. (942 aa)
	JCGZ_26150	Uncharacterized protein. (149 aa)
	JCGZ_26275	Uncharacterized protein. (331 aa)
	JCGZ_14224	RPOL9 domain-containing protein. (77 aa)
	JCGZ_21088	Uncharacterized protein. (256 aa)
	JCGZ_13730	Uncharacterized protein. (206 aa)
	JCGZ_12253	Uncharacterized protein. (720 aa)
	JCGZ_07277	Uncharacterized protein. (206 aa)
	JCGZ_07474	Uncharacterized protein. (297 aa)
	JCGZ_09049	SANTA domain-containing protein. (588 aa)
	JCGZ_01055	RPOLD domain-containing protein. (376 aa)
	JCGZ_24565	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1152 aa)
	JCGZ_24846	Uncharacterized protein. (206 aa)
	JCGZ_23778	Uncharacterized protein. (191 aa)
	JCGZ_02908	Uncharacterized protein. (398 aa)
	JCGZ_05743	Uncharacterized protein. (109 aa)
	JCGZ_05749	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family. (138 aa)
	JCGZ_16325	Uncharacterized protein. (80 aa)
	JCGZ_24528	RPOLA_N domain-containing protein. (1821 aa)
	JCGZ_20928	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family. (146 aa)
	JCGZ_05745	Uncharacterized protein. (146 aa)
	JCGZ_23792	SANTA domain-containing protein. (331 aa)
	JCGZ_10967	Phorbol-ester/DAG-type domain-containing protein. (568 aa)
	JCGZ_17226	RPOL4c domain-containing protein. (172 aa)
	JHL06P13.1	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (235 aa)

Your Current Organism:

Jatropha curcas

NCBI taxonomy Id: 180498
Other names: J. curcas, Jatropha curcas L.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
JCGZ_01055	JCGZ_02908	A0A067KWG0	A0A067L4N9	RPOLD domain-containing protein.	Uncharacterized protein.	0.990
JCGZ_01055	JCGZ_05617	A0A067KWG0	A0A067LHS5	RPOLD domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.997
JCGZ_01055	JCGZ_05743	A0A067KWG0	A0A067L757	RPOLD domain-containing protein.	Uncharacterized protein.	0.969
JCGZ_01055	JCGZ_05745	A0A067KWG0	A0A067LAQ0	RPOLD domain-containing protein.	Uncharacterized protein.	0.969
JCGZ_01055	JCGZ_05749	A0A067KWG0	A0A067L7B6	RPOLD domain-containing protein.	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	0.969
JCGZ_01055	JCGZ_07277	A0A067KWG0	A0A067KBZ2	RPOLD domain-containing protein.	Uncharacterized protein.	0.978
JCGZ_01055	JCGZ_07474	A0A067KWG0	A0A067KFX4	RPOLD domain-containing protein.	Uncharacterized protein.	0.988
JCGZ_01055	JCGZ_09049	A0A067KWG0	A0A067KH99	RPOLD domain-containing protein.	SANTA domain-containing protein.	0.929
JCGZ_01055	JCGZ_10967	A0A067KWG0	A0A067LH36	RPOLD domain-containing protein.	Phorbol-ester/DAG-type domain-containing protein.	0.929
JCGZ_01055	JCGZ_12253	A0A067KWG0	A0A067K6S2	RPOLD domain-containing protein.	Uncharacterized protein.	0.990
JCGZ_01055	JCGZ_13730	A0A067KWG0	A0A067K3V6	RPOLD domain-containing protein.	Uncharacterized protein.	0.978
JCGZ_01055	JCGZ_14224	A0A067KWG0	A0A067K072	RPOLD domain-containing protein.	RPOL9 domain-containing protein.	0.995
JCGZ_01055	JCGZ_16325	A0A067KWG0	A0A067L7U6	RPOLD domain-containing protein.	Uncharacterized protein.	0.929
JCGZ_01055	JCGZ_17226	A0A067KWG0	A0A067LMI0	RPOLD domain-containing protein.	RPOL4c domain-containing protein.	0.993
JCGZ_01055	JCGZ_20677	A0A067KWG0	A0A067JNF8	RPOLD domain-containing protein.	Uncharacterized protein.	0.735
JCGZ_01055	JCGZ_20928	A0A067KWG0	A0A067L9K4	RPOLD domain-containing protein.	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	0.969
JCGZ_01055	JCGZ_21088	A0A067KWG0	A0A067K1C2	RPOLD domain-containing protein.	Uncharacterized protein.	0.929
JCGZ_01055	JCGZ_21833	A0A067KWG0	A0A067JC29	RPOLD domain-containing protein.	Uncharacterized protein.	0.994
JCGZ_01055	JCGZ_23778	A0A067KWG0	A0A067L302	RPOLD domain-containing protein.	Uncharacterized protein.	0.929
JCGZ_01055	JCGZ_23792	A0A067KWG0	A0A067LEB4	RPOLD domain-containing protein.	SANTA domain-containing protein.	0.929