STRINGSTRING
JCGZ_03689 JCGZ_03689 JCGZ_08086 JCGZ_08086 JCGZ_15022 JCGZ_15022 JCGZ_16379 JCGZ_16379 JCGZ_26664 JCGZ_26664 JCGZ_06768 JCGZ_06768 JCGZ_05185 JCGZ_05185 JCGZ_04792 JCGZ_04792 JCGZ_15993 JCGZ_15993 JCGZ_26257 JCGZ_26257 JCGZ_21949 JCGZ_21949 JCGZ_22019 JCGZ_22019 JCGZ_25914 JCGZ_25914 JCGZ_21671 JCGZ_21671 JCGZ_17626 JCGZ_17626 JCGZ_18046 JCGZ_18046 JCGZ_09152 JCGZ_09152
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
JCGZ_03689U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (207 aa)
JCGZ_08086Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (131 aa)
JCGZ_15022Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (114 aa)
JCGZ_16379Uncharacterized protein. (727 aa)
JCGZ_26664Small nuclear ribonucleoprotein G. (124 aa)
JCGZ_06768Small nuclear ribonucleoprotein G. (80 aa)
JCGZ_05185RRM domain-containing protein. (509 aa)
JCGZ_04792Small nuclear ribonucleoprotein Sm D2. (103 aa)
JCGZ_15993Uncharacterized protein. (1008 aa)
JCGZ_26257Uncharacterized protein. (353 aa)
JCGZ_21949Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (114 aa)
JCGZ_22019U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (189 aa)
JCGZ_25914Uncharacterized protein. (416 aa)
JCGZ_21671Uncharacterized protein. (1152 aa)
JCGZ_17626Uncharacterized protein. (838 aa)
JCGZ_18046Uncharacterized protein. (414 aa)
JCGZ_09152Sm domain-containing protein. (291 aa)
Your Current Organism:
Jatropha curcas
NCBI taxonomy Id: 180498
Other names: J. curcas, Jatropha curcas L.
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