44 items (Jatropha curcas) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	JCGZ_11761	Uncharacterized protein. (745 aa)
	JCGZ_08660	RPA_C domain-containing protein. (276 aa)
	JCGZ_12976	Uncharacterized protein. (382 aa)
	JCGZ_08068	Uncharacterized protein. (351 aa)
	JCGZ_13184	Uncharacterized protein. (599 aa)
	JCGZ_12081	Uncharacterized protein. (296 aa)
	JCGZ_12126	ENDO3c domain-containing protein. (401 aa)
	JCGZ_13449	Uncharacterized protein. (899 aa)
	JCGZ_06114	Checkpoint protein; Belongs to the HUS1 family. (320 aa)
	JCGZ_10920	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (1142 aa)
	JCGZ_02766	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (869 aa)
	JCGZ_01090	Uncharacterized protein. (544 aa)
	JCGZ_03237	Uncharacterized protein. (481 aa)
	JCGZ_03504	ERCC4 domain-containing protein. (554 aa)
	JCGZ_04068	MAT1 domain-containing protein. (180 aa)
	NTH1	Endonuclease III homolog; Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N-glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines. (359 aa)
	JCGZ_02068	Uncharacterized protein. (452 aa)
	JCGZ_03239	DNA_ligase_A_N domain-containing protein. (123 aa)
	JCGZ_16026	WD_REPEATS_REGION domain-containing protein. (432 aa)
	JCGZ_13483	Uncharacterized protein. (525 aa)
	JCGZ_26942	Uncharacterized protein. (352 aa)
	JCGZ_09637	Uncharacterized protein. (535 aa)
	JCGZ_10771	Uncharacterized protein. (140 aa)
	JCGZ_15155	Uncharacterized protein. (524 aa)
	JCGZ_10770	Uncharacterized protein. (189 aa)
	JCGZ_05562	C2H2-type domain-containing protein. (208 aa)
	JCGZ_21423	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (450 aa)
	JCGZ_21942	Helicase ATP-binding domain-containing protein. (235 aa)
	JCGZ_05295	Helicase ATP-binding domain-containing protein. (758 aa)
	JCGZ_23376	Uncharacterized protein. (377 aa)
	JCGZ_20563	Uncharacterized protein. (771 aa)
	JCGZ_22891	DNA polymerase. (1092 aa)
	JCGZ_22448	DNA-(apurinic or apyrimidinic site) lyase; Belongs to the DNA repair enzymes AP/ExoA family. (548 aa)
	JCGZ_01831	Uncharacterized protein. (909 aa)
	JCGZ_18978	Uncharacterized protein; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (255 aa)
	JCGZ_20740	Uncharacterized protein. (70 aa)
	JCGZ_17672	Uncharacterized protein. (1227 aa)
	JCGZ_15357	Uncharacterized protein. (645 aa)
	JCGZ_11729	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (622 aa)
	JCGZ_13382	Uncharacterized protein. (481 aa)
	JCGZ_07482	Uncharacterized protein. (777 aa)
	JCGZ_07468	Rep-A_N domain-containing protein. (101 aa)
	JCGZ_07598	Uncharacterized protein. (696 aa)
	JCGZ_07009	Uncharacterized protein. (279 aa)

Your Current Organism:

Jatropha curcas

NCBI taxonomy Id: 180498
Other names: J. curcas, Jatropha curcas L.

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
JCGZ_01090	JCGZ_03237	A0A067KWI7	A0A067KY67	Uncharacterized protein.	Uncharacterized protein.	0.485
JCGZ_01090	JCGZ_03239	A0A067KWI7	A0A067LAH5	Uncharacterized protein.	DNA_ligase_A_N domain-containing protein.	0.485
JCGZ_01090	JCGZ_03504	A0A067KWI7	A0A067KYA6	Uncharacterized protein.	ERCC4 domain-containing protein.	0.646
JCGZ_01090	JCGZ_04068	A0A067KWI7	A0A067L2M4	Uncharacterized protein.	MAT1 domain-containing protein.	0.923
JCGZ_01090	JCGZ_05295	A0A067KWI7	A0A067JKA4	Uncharacterized protein.	Helicase ATP-binding domain-containing protein.	0.924
JCGZ_01090	JCGZ_05562	A0A067KWI7	A0A067LHM1	Uncharacterized protein.	C2H2-type domain-containing protein.	0.968
JCGZ_01090	JCGZ_07009	A0A067KWI7	A0A067KEK5	Uncharacterized protein.	Uncharacterized protein.	0.517
JCGZ_01090	JCGZ_08068	A0A067KWI7	A0A067KKZ8	Uncharacterized protein.	Uncharacterized protein.	0.804
JCGZ_01090	JCGZ_08660	A0A067KWI7	A0A067KJH9	Uncharacterized protein.	RPA_C domain-containing protein.	0.517
JCGZ_01090	JCGZ_09637	A0A067KWI7	A0A067LDS5	Uncharacterized protein.	Uncharacterized protein.	0.949
JCGZ_01090	JCGZ_10920	A0A067KWI7	A0A067KR42	Uncharacterized protein.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.516
JCGZ_01090	JCGZ_12081	A0A067KWI7	A0A067KLW9	Uncharacterized protein.	Uncharacterized protein.	0.968
JCGZ_01090	JCGZ_12976	A0A067KWI7	A0A067KKZ5	Uncharacterized protein.	Uncharacterized protein.	0.677
JCGZ_01090	JCGZ_13184	A0A067KWI7	A0A067KLF7	Uncharacterized protein.	Uncharacterized protein.	0.969
JCGZ_01090	JCGZ_13449	A0A067KWI7	A0A067KN18	Uncharacterized protein.	Uncharacterized protein.	0.921
JCGZ_01090	JCGZ_16026	A0A067KWI7	A0A067LBY8	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.749
JCGZ_01090	JCGZ_17672	A0A067KWI7	A0A067K3X4	Uncharacterized protein.	Uncharacterized protein.	0.620
JCGZ_01090	JCGZ_18978	A0A067KWI7	A0A067JYM8	Uncharacterized protein.	Uncharacterized protein; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.939
JCGZ_01090	JCGZ_20740	A0A067KWI7	A0A067K1B6	Uncharacterized protein.	Uncharacterized protein.	0.948
JCGZ_01090	JCGZ_21423	A0A067KWI7	A0A067JB09	Uncharacterized protein.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.973