28 items (Jatropha curcas) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	JCGZ_21006	Uncharacterized protein. (690 aa)
	JCGZ_20272	Uncharacterized protein. (569 aa)
	JCGZ_20271	Uncharacterized protein. (579 aa)
	JCGZ_16395	Uncharacterized protein. (661 aa)
	JCGZ_08964	Uncharacterized protein. (745 aa)
	JCGZ_08965	Uncharacterized protein. (577 aa)
	JCGZ_06558	Uncharacterized protein. (748 aa)
	JCGZ_24211	Uncharacterized protein. (671 aa)
	JCGZ_03016	Uncharacterized protein. (747 aa)
	JCGZ_17424	Uncharacterized protein. (698 aa)
	JCGZ_15926	Uncharacterized protein. (441 aa)
	JCGZ_02378	Uncharacterized protein. (666 aa)
	JCGZ_02368	Uncharacterized protein. (592 aa)
	JCGZ_01052	Uncharacterized protein. (716 aa)
	JCGZ_15925	Uncharacterized protein. (730 aa)
	JCGZ_26809	Uncharacterized protein. (670 aa)
	JCGZ_16024	Uncharacterized protein. (690 aa)
	JCGZ_08943	Uncharacterized protein. (743 aa)
	JCGZ_01054	Uncharacterized protein. (750 aa)
	JCGZ_01053	Uncharacterized protein. (776 aa)
	JCGZ_10942	Uncharacterized protein. (552 aa)
	JCGZ_09924	Uncharacterized protein. (254 aa)
	JCGZ_09928	Uncharacterized protein. (135 aa)
	JCGZ_03353	Uncharacterized protein. (586 aa)
	JCGZ_03001	Uncharacterized protein. (550 aa)
	JCGZ_00027	Uncharacterized protein. (79 aa)
	JCGZ_20389	Uncharacterized protein. (756 aa)
	JCGZ_20355	Uncharacterized protein. (662 aa)

Your Current Organism:

Jatropha curcas

NCBI taxonomy Id: 180498
Other names: J. curcas, Jatropha curcas L.

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
JCGZ_02368	JCGZ_08965	A0A067L788	A0A067KHC2	Uncharacterized protein.	Uncharacterized protein.	0.639
JCGZ_03016	JCGZ_20355	A0A067LDI9	A0A067K0B0	Uncharacterized protein.	Uncharacterized protein.	0.443
JCGZ_03353	JCGZ_08965	A0A067JD01	A0A067KHC2	Uncharacterized protein.	Uncharacterized protein.	0.639
JCGZ_08943	JCGZ_16395	A0A067KTA3	A0A067K6P2	Uncharacterized protein.	Uncharacterized protein.	0.471
JCGZ_08943	JCGZ_20355	A0A067KTA3	A0A067K0B0	Uncharacterized protein.	Uncharacterized protein.	0.577
JCGZ_08965	JCGZ_02368	A0A067KHC2	A0A067L788	Uncharacterized protein.	Uncharacterized protein.	0.639
JCGZ_08965	JCGZ_03353	A0A067KHC2	A0A067JD01	Uncharacterized protein.	Uncharacterized protein.	0.639
JCGZ_16395	JCGZ_08943	A0A067K6P2	A0A067KTA3	Uncharacterized protein.	Uncharacterized protein.	0.471
JCGZ_20355	JCGZ_03016	A0A067K0B0	A0A067LDI9	Uncharacterized protein.	Uncharacterized protein.	0.443
JCGZ_20355	JCGZ_08943	A0A067K0B0	A0A067KTA3	Uncharacterized protein.	Uncharacterized protein.	0.577
JCGZ_20355	JCGZ_20389	A0A067K0B0	A0A067JR19	Uncharacterized protein.	Uncharacterized protein.	0.437
JCGZ_20389	JCGZ_20355	A0A067JR19	A0A067K0B0	Uncharacterized protein.	Uncharacterized protein.	0.437