15 items (Jatropha curcas) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	JCGZ_04990	Uncharacterized protein. (1252 aa)
	JCGZ_11761	Uncharacterized protein. (745 aa)
	JCGZ_11712	Uncharacterized protein. (2102 aa)
	JCGZ_17918	Helicase C-terminal domain-containing protein. (359 aa)
	JCGZ_26320	Uncharacterized protein. (265 aa)
	JCGZ_17919	Uncharacterized protein. (1162 aa)
	JCGZ_20563	Uncharacterized protein. (771 aa)
	JCGZ_23320	Uncharacterized protein. (623 aa)
	JCGZ_23244	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (614 aa)
	JCGZ_17267	HTH_40 domain-containing protein. (248 aa)
	JCGZ_15155	Uncharacterized protein. (524 aa)
	JCGZ_22344	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (660 aa)
	JCGZ_01090	Uncharacterized protein. (544 aa)
	JCGZ_08713	Uncharacterized protein. (629 aa)
	JCGZ_10816	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (705 aa)

Your Current Organism:

Jatropha curcas

NCBI taxonomy Id: 180498
Other names: J. curcas, Jatropha curcas L.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
JCGZ_04990	JCGZ_08713	A0A067KV41	A0A067KW43	Uncharacterized protein.	Uncharacterized protein.	0.670
JCGZ_04990	JCGZ_26320	A0A067KV41	A0A067JSG8	Uncharacterized protein.	Uncharacterized protein.	0.670
JCGZ_08713	JCGZ_04990	A0A067KW43	A0A067KV41	Uncharacterized protein.	Uncharacterized protein.	0.670
JCGZ_08713	JCGZ_17267	A0A067KW43	A0A067LLL8	Uncharacterized protein.	HTH_40 domain-containing protein.	0.670
JCGZ_08713	JCGZ_17918	A0A067KW43	A0A067K3E5	Uncharacterized protein.	Helicase C-terminal domain-containing protein.	0.670
JCGZ_08713	JCGZ_17919	A0A067KW43	A0A067JS46	Uncharacterized protein.	Uncharacterized protein.	0.670
JCGZ_08713	JCGZ_22344	A0A067KW43	A0A067L5Q9	Uncharacterized protein.	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.	0.670
JCGZ_08713	JCGZ_23244	A0A067KW43	A0A067JHI8	Uncharacterized protein.	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.	0.670
JCGZ_08713	JCGZ_23320	A0A067KW43	A0A067JHY4	Uncharacterized protein.	Uncharacterized protein.	0.670
JCGZ_10816	JCGZ_26320	A0A067KK94	A0A067JSG8	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.	Uncharacterized protein.	0.429
JCGZ_17267	JCGZ_08713	A0A067LLL8	A0A067KW43	HTH_40 domain-containing protein.	Uncharacterized protein.	0.670
JCGZ_17267	JCGZ_26320	A0A067LLL8	A0A067JSG8	HTH_40 domain-containing protein.	Uncharacterized protein.	0.670
JCGZ_17918	JCGZ_08713	A0A067K3E5	A0A067KW43	Helicase C-terminal domain-containing protein.	Uncharacterized protein.	0.670
JCGZ_17918	JCGZ_17919	A0A067K3E5	A0A067JS46	Helicase C-terminal domain-containing protein.	Uncharacterized protein.	0.461
JCGZ_17918	JCGZ_22344	A0A067K3E5	A0A067L5Q9	Helicase C-terminal domain-containing protein.	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.	0.413
JCGZ_17918	JCGZ_26320	A0A067K3E5	A0A067JSG8	Helicase C-terminal domain-containing protein.	Uncharacterized protein.	0.670
JCGZ_17919	JCGZ_08713	A0A067JS46	A0A067KW43	Uncharacterized protein.	Uncharacterized protein.	0.670
JCGZ_17919	JCGZ_17918	A0A067JS46	A0A067K3E5	Uncharacterized protein.	Helicase C-terminal domain-containing protein.	0.461
JCGZ_17919	JCGZ_26320	A0A067JS46	A0A067JSG8	Uncharacterized protein.	Uncharacterized protein.	0.670
JCGZ_22344	JCGZ_08713	A0A067L5Q9	A0A067KW43	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.	Uncharacterized protein.	0.670