(40 nodes) Gibberellin catabolic process network (Jatropha curcas)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	JCGZ_08100	Uncharacterized protein. (246 aa)
	JCGZ_08111	Uncharacterized protein. (448 aa)
	JCGZ_08101	Uncharacterized protein. (170 aa)
	JCGZ_24505	Uncharacterized protein. (290 aa)
	JCGZ_11206	Uncharacterized protein. (409 aa)
	JCGZ_07706	Uncharacterized protein; Belongs to the cytochrome P450 family. (511 aa)
	JCGZ_08109	Uncharacterized protein. (449 aa)
	JCGZ_08104	Uncharacterized protein. (186 aa)
	JCGZ_08099	Uncharacterized protein. (328 aa)
	JCGZ_04619	Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family. (339 aa)
	JCGZ_08113	Uncharacterized protein. (696 aa)
	JCGZ_08108	Uncharacterized protein. (446 aa)
	JCGZ_08093	Uncharacterized protein. (450 aa)
	JCGZ_08098	Uncharacterized protein. (337 aa)
	JCGZ_08112	Uncharacterized protein. (446 aa)
	JCGZ_08102	Uncharacterized protein. (293 aa)
	JCGZ_08097	Uncharacterized protein. (446 aa)
	JCGZ_11340	Uncharacterized protein. (423 aa)
	JCGZ_10700	Uncharacterized protein. (460 aa)
	JCGZ_16163	Uncharacterized protein. (451 aa)
	JCGZ_16164	Uncharacterized protein. (437 aa)
	JCGZ_07032	Uncharacterized protein; Belongs to the cytochrome P450 family. (520 aa)
	JCGZ_14065	Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family. (333 aa)
	JCGZ_16162	Uncharacterized protein. (451 aa)
	JCGZ_18588	Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family. (328 aa)
	JCGZ_19047	Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family. (340 aa)
	JCGZ_17900	Uncharacterized protein. (438 aa)
	JCGZ_17899	Uncharacterized protein. (432 aa)
	JCGZ_00617	Uncharacterized protein; Belongs to the cytochrome P450 family. (535 aa)
	JCGZ_26103	Uncharacterized protein. (316 aa)
	JCGZ_00619	Uncharacterized protein; Belongs to the cytochrome P450 family. (328 aa)
	JCGZ_21273	Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family. (332 aa)
	JCGZ_06417	Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family. (334 aa)
	JCGZ_05900	Uncharacterized protein. (454 aa)
	JCGZ_17192	Uncharacterized protein. (447 aa)
	JCGZ_17273	Uncharacterized protein; Belongs to the cytochrome P450 family. (512 aa)
	JCGZ_24898	Uncharacterized protein. (432 aa)
	JCGZ_16894	Uncharacterized protein. (255 aa)
	JCGZ_00812	Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family. (323 aa)
	JCGZ_08110	Uncharacterized protein. (448 aa)

Your Current Organism:

Jatropha curcas

NCBI taxonomy Id: 180498
Other names: J. curcas, Jatropha curcas L.

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
JCGZ_08104	JCGZ_24505	A0A067KP99	A0A067KWB7	Uncharacterized protein.	Uncharacterized protein.	0.507
JCGZ_08113	JCGZ_11340	A0A067KL32	A0A067KGJ1	Uncharacterized protein.	Uncharacterized protein.	0.675
JCGZ_08113	JCGZ_16163	A0A067KL32	A0A067KF48	Uncharacterized protein.	Uncharacterized protein.	0.674
JCGZ_08113	JCGZ_16164	A0A067KL32	A0A067KE00	Uncharacterized protein.	Uncharacterized protein.	0.672
JCGZ_08113	JCGZ_17899	A0A067KL32	A0A067JS33	Uncharacterized protein.	Uncharacterized protein.	0.670
JCGZ_08113	JCGZ_24505	A0A067KL32	A0A067KWB7	Uncharacterized protein.	Uncharacterized protein.	0.676
JCGZ_11340	JCGZ_08113	A0A067KGJ1	A0A067KL32	Uncharacterized protein.	Uncharacterized protein.	0.675
JCGZ_11340	JCGZ_16163	A0A067KGJ1	A0A067KF48	Uncharacterized protein.	Uncharacterized protein.	0.679
JCGZ_11340	JCGZ_16164	A0A067KGJ1	A0A067KE00	Uncharacterized protein.	Uncharacterized protein.	0.680
JCGZ_11340	JCGZ_17899	A0A067KGJ1	A0A067JS33	Uncharacterized protein.	Uncharacterized protein.	0.669
JCGZ_11340	JCGZ_24505	A0A067KGJ1	A0A067KWB7	Uncharacterized protein.	Uncharacterized protein.	0.681
JCGZ_16163	JCGZ_08113	A0A067KF48	A0A067KL32	Uncharacterized protein.	Uncharacterized protein.	0.674
JCGZ_16163	JCGZ_11340	A0A067KF48	A0A067KGJ1	Uncharacterized protein.	Uncharacterized protein.	0.679
JCGZ_16163	JCGZ_16164	A0A067KF48	A0A067KE00	Uncharacterized protein.	Uncharacterized protein.	0.657
JCGZ_16163	JCGZ_17899	A0A067KF48	A0A067JS33	Uncharacterized protein.	Uncharacterized protein.	0.679
JCGZ_16163	JCGZ_24505	A0A067KF48	A0A067KWB7	Uncharacterized protein.	Uncharacterized protein.	0.668
JCGZ_16164	JCGZ_08113	A0A067KE00	A0A067KL32	Uncharacterized protein.	Uncharacterized protein.	0.672
JCGZ_16164	JCGZ_11340	A0A067KE00	A0A067KGJ1	Uncharacterized protein.	Uncharacterized protein.	0.680
JCGZ_16164	JCGZ_16163	A0A067KE00	A0A067KF48	Uncharacterized protein.	Uncharacterized protein.	0.657
JCGZ_16164	JCGZ_17899	A0A067KE00	A0A067JS33	Uncharacterized protein.	Uncharacterized protein.	0.677