41 items (Jatropha curcas) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	JCGZ_26105	Uncharacterized protein. (521 aa)
	JCGZ_23034	Uncharacterized protein. (368 aa)
	JCGZ_20896	Uncharacterized protein. (992 aa)
	JCGZ_02197	CDC73_C domain-containing protein. (127 aa)
	JCGZ_02232	Uncharacterized protein. (194 aa)
	JCGZ_02327	Photolyase/cryptochrome alpha/beta domain-containing protein. (647 aa)
	JCGZ_15952	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (443 aa)
	JCGZ_15571	MYB family protein. (478 aa)
	JCGZ_15951	Uncharacterized protein. (232 aa)
	JCGZ_16716	Uncharacterized protein. (1030 aa)
	JCGZ_21497	Uncharacterized protein. (485 aa)
	MFT2	Mother of FT and TFL1 2. (175 aa)
	JCGZ_10949	Uncharacterized protein. (1044 aa)
	JCGZ_18295	Uncharacterized protein. (231 aa)
	JCGZ_07082	NPH3 domain-containing protein; Belongs to the NPH3 family. (164 aa)
	JCGZ_12069	Uncharacterized protein. (441 aa)
	JCGZ_14586	SBP-type domain-containing protein. (419 aa)
	JCGZ_14231	Dof-type domain-containing protein. (287 aa)
	JCGZ_13791	Uncharacterized protein. (755 aa)
	JCGZ_11437	JmjC domain-containing protein. (475 aa)
	JCGZ_20605	Uncharacterized protein. (1005 aa)
	JCGZ_25083	Uncharacterized protein. (87 aa)
	JCGZ_14417	Uncharacterized protein. (1025 aa)
	JCGZ_23518	Uncharacterized protein. (558 aa)
	JCGZ_20609	Uncharacterized protein. (523 aa)
	JCGZ_25509	Uncharacterized protein. (788 aa)
	JCGZ_25359	Uncharacterized protein. (117 aa)
	JCGZ_11586	Uncharacterized protein. (1027 aa)
	MFT1	MOTHER of FT and TFL1 1. (172 aa)
	JCGZ_11305	Uncharacterized protein. (232 aa)
	JCGZ_12220	Uncharacterized protein. (474 aa)
	JCGZ_08712	JmjC domain-containing protein. (321 aa)
	FKF1	Flavin-binding kelch repeat F box protein. (615 aa)
	JCGZ_00983	Uncharacterized protein. (1383 aa)
	JCGZ_02658	Uncharacterized protein. (1008 aa)
	JCGZ_15868	Glucose-6-phosphate isomerase; Belongs to the GPI family. (618 aa)
	JCGZ_15953	Uncharacterized protein. (601 aa)
	JCGZ_15954	Uncharacterized protein. (73 aa)
	JCGZ_04510	Uncharacterized protein. (312 aa)
	JCGZ_15950	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (469 aa)
	JCGZ_23918	Uncharacterized protein. (410 aa)

Your Current Organism:

Jatropha curcas

NCBI taxonomy Id: 180498
Other names: J. curcas, Jatropha curcas L.

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FKF1	JCGZ_02327	A0A067KPI3	A0A067L8A7	Flavin-binding kelch repeat F box protein.	Photolyase/cryptochrome alpha/beta domain-containing protein.	0.652
FKF1	JCGZ_11305	A0A067KPI3	A0A067KGG1	Flavin-binding kelch repeat F box protein.	Uncharacterized protein.	0.919
JCGZ_02327	FKF1	A0A067L8A7	A0A067KPI3	Photolyase/cryptochrome alpha/beta domain-containing protein.	Flavin-binding kelch repeat F box protein.	0.652
JCGZ_11305	FKF1	A0A067KGG1	A0A067KPI3	Uncharacterized protein.	Flavin-binding kelch repeat F box protein.	0.919
JCGZ_11305	MFT1	A0A067KGG1	W5RZI8	Uncharacterized protein.	MOTHER of FT and TFL1 1.	0.914
JCGZ_11305	MFT2	A0A067KGG1	A0A067JAS8	Uncharacterized protein.	Mother of FT and TFL1 2.	0.914
JCGZ_20609	JCGZ_26105	A0A067JRK0	A0A067JRX3	Uncharacterized protein.	Uncharacterized protein.	0.901
JCGZ_20896	JCGZ_23518	A0A067L5Z2	A0A067JUM6	Uncharacterized protein.	Uncharacterized protein.	0.527
JCGZ_23034	JCGZ_23518	A0A067L5T8	A0A067JUM6	Uncharacterized protein.	Uncharacterized protein.	0.467
JCGZ_23518	JCGZ_20896	A0A067JUM6	A0A067L5Z2	Uncharacterized protein.	Uncharacterized protein.	0.527
JCGZ_23518	JCGZ_23034	A0A067JUM6	A0A067L5T8	Uncharacterized protein.	Uncharacterized protein.	0.467
JCGZ_26105	JCGZ_20609	A0A067JRX3	A0A067JRK0	Uncharacterized protein.	Uncharacterized protein.	0.901
MFT1	JCGZ_11305	W5RZI8	A0A067KGG1	MOTHER of FT and TFL1 1.	Uncharacterized protein.	0.914
MFT2	JCGZ_11305	A0A067JAS8	A0A067KGG1	Mother of FT and TFL1 2.	Uncharacterized protein.	0.914