52 items (Jatropha curcas) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	JCGZ_04536	PUM-HD domain-containing protein. (959 aa)
	JCGZ_00237	YTH domain-containing protein. (589 aa)
	JCGZ_22047	Uncharacterized protein. (737 aa)
	JCGZ_05475	Uncharacterized protein. (166 aa)
	LSM3-2	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (97 aa)
	JCGZ_26681	Uncharacterized protein. (303 aa)
	JCGZ_05633	NOT2_3_5 domain-containing protein. (664 aa)
	JCGZ_02928	Uncharacterized protein. (176 aa)
	JCGZ_27001	Uncharacterized protein. (274 aa)
	JCGZ_26675	Uncharacterized protein. (287 aa)
	JCGZ_04012	Uncharacterized protein. (269 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (97 aa)
	JCGZ_04013	Uncharacterized protein. (263 aa)
	JCGZ_24370	Uncharacterized protein. (295 aa)
	JCGZ_02728	YTH domain-containing protein. (663 aa)
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (128 aa)
	JCGZ_13561	Uncharacterized protein. (370 aa)
	JCGZ_07101	Uncharacterized protein. (275 aa)
	JCGZ_08832	Uncharacterized protein. (366 aa)
	JCGZ_08787	Uncharacterized protein. (287 aa)
	JCGZ_11480	KH_dom_type_1 domain-containing protein. (241 aa)
	JCGZ_13792	Uncharacterized protein. (287 aa)
	JCGZ_10671	Sm domain-containing protein. (103 aa)
	JCGZ_09210	DRBM domain-containing protein. (940 aa)
	JCGZ_12063	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'. (1118 aa)
	JCGZ_13317	Uncharacterized protein. (779 aa)
	LSM5-2	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (87 aa)
	JCGZ_19307	YTH domain-containing protein. (688 aa)
	LSM5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (87 aa)
	JCGZ_14579	Uncharacterized protein. (1467 aa)
	JCGZ_18490	Uncharacterized protein. (287 aa)
	JCGZ_22659	Uncharacterized protein. (779 aa)
	JCGZ_19063	YTH domain-containing protein. (695 aa)
	JCGZ_23577	RPOL4c domain-containing protein. (164 aa)
	JCGZ_01687	YTH domain-containing protein. (689 aa)
	JCGZ_20215	Uncharacterized protein. (276 aa)
	JCGZ_17969	YTH domain-containing protein. (600 aa)
	JCGZ_22563	YTH domain-containing protein. (652 aa)
	JCGZ_21085	RNase_PH domain-containing protein. (305 aa)
	JCGZ_00587	Uncharacterized protein. (295 aa)
	JCGZ_20677	Uncharacterized protein. (942 aa)
	JCGZ_21986	S1 domain-containing protein. (321 aa)
	JCGZ_22657	Uncharacterized protein. (805 aa)
	JCGZ_22581	PUM-HD domain-containing protein. (998 aa)
	JCGZ_00595	Uncharacterized protein. (300 aa)
	JCGZ_03034	Uncharacterized protein. (603 aa)
	JCGZ_21973	Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing. (86 aa)
	JCGZ_06854	Uncharacterized protein. (897 aa)
	JHL05D22.13	JHL05D22.13 protein. (748 aa)
	JCGZ_20044	Nudix hydrolase domain-containing protein. (319 aa)
	JCGZ_24226	RNase_PH domain-containing protein. (186 aa)
	JCGZ_11831	Uncharacterized protein. (458 aa)

Your Current Organism:

Jatropha curcas

NCBI taxonomy Id: 180498
Other names: J. curcas, Jatropha curcas L.

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
JCGZ_00587	JCGZ_03034	A0A067JP74	A0A067JDF9	Uncharacterized protein.	Uncharacterized protein.	0.619
JCGZ_00587	JCGZ_04012	A0A067JP74	A0A067L3J9	Uncharacterized protein.	Uncharacterized protein.	0.421
JCGZ_00587	JCGZ_04013	A0A067JP74	A0A067L2F4	Uncharacterized protein.	Uncharacterized protein.	0.415
JCGZ_00587	JCGZ_05633	A0A067JP74	A0A067L6T2	Uncharacterized protein.	NOT2_3_5 domain-containing protein.	0.865
JCGZ_00587	JCGZ_06854	A0A067JP74	A0A067JC18	Uncharacterized protein.	Uncharacterized protein.	0.863
JCGZ_00587	JCGZ_07101	A0A067JP74	A0A067KMK9	Uncharacterized protein.	Uncharacterized protein.	0.412
JCGZ_00587	JCGZ_08787	A0A067JP74	A0A067KMB5	Uncharacterized protein.	Uncharacterized protein.	0.430
JCGZ_00587	JCGZ_14579	A0A067JP74	A0A067K1A7	Uncharacterized protein.	Uncharacterized protein.	0.873
JCGZ_00587	JCGZ_20044	A0A067JP74	A0A067LJB3	Uncharacterized protein.	Nudix hydrolase domain-containing protein.	0.595
JCGZ_00587	JCGZ_20215	A0A067JP74	A0A067JTU3	Uncharacterized protein.	Uncharacterized protein.	0.422
JCGZ_00587	JCGZ_27001	A0A067JP74	A0A067L410	Uncharacterized protein.	Uncharacterized protein.	0.414
JCGZ_00595	JCGZ_03034	A0A067JGA6	A0A067JDF9	Uncharacterized protein.	Uncharacterized protein.	0.619
JCGZ_00595	JCGZ_04012	A0A067JGA6	A0A067L3J9	Uncharacterized protein.	Uncharacterized protein.	0.422
JCGZ_00595	JCGZ_04013	A0A067JGA6	A0A067L2F4	Uncharacterized protein.	Uncharacterized protein.	0.414
JCGZ_00595	JCGZ_05633	A0A067JGA6	A0A067L6T2	Uncharacterized protein.	NOT2_3_5 domain-containing protein.	0.865
JCGZ_00595	JCGZ_06854	A0A067JGA6	A0A067JC18	Uncharacterized protein.	Uncharacterized protein.	0.863
JCGZ_00595	JCGZ_07101	A0A067JGA6	A0A067KMK9	Uncharacterized protein.	Uncharacterized protein.	0.411
JCGZ_00595	JCGZ_08787	A0A067JGA6	A0A067KMB5	Uncharacterized protein.	Uncharacterized protein.	0.430
JCGZ_00595	JCGZ_14579	A0A067JGA6	A0A067K1A7	Uncharacterized protein.	Uncharacterized protein.	0.873
JCGZ_00595	JCGZ_20044	A0A067JGA6	A0A067LJB3	Uncharacterized protein.	Nudix hydrolase domain-containing protein.	0.595