23 items (Jatropha curcas) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	JCGZ_23773	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (574 aa)
	JCGZ_26664	Small nuclear ribonucleoprotein G. (124 aa)
	JCGZ_24198	Uncharacterized protein. (808 aa)
	JCGZ_16379	Uncharacterized protein. (727 aa)
	JCGZ_12252	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (588 aa)
	JCGZ_16583	Matrin-type domain-containing protein. (326 aa)
	JCGZ_11741	C3H1-type domain-containing protein. (1513 aa)
	JCGZ_21671	Uncharacterized protein. (1152 aa)
	JCGZ_17626	Uncharacterized protein. (838 aa)
	JCGZ_20962	Stem-specific protein tsjt1, putative. (255 aa)
	JCGZ_09152	Sm domain-containing protein. (291 aa)
	JCGZ_23174	X8 domain-containing protein. (599 aa)
	JCGZ_03689	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (207 aa)
	JCGZ_04071	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (592 aa)
	JCGZ_02367	Uncharacterized protein. (904 aa)
	JCGZ_06768	Small nuclear ribonucleoprotein G. (80 aa)
	JCGZ_22019	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (189 aa)
	JCGZ_26257	Uncharacterized protein. (353 aa)
	JCGZ_24925	TOG domain-containing protein. (1265 aa)
	JCGZ_15993	Uncharacterized protein. (1008 aa)
	JCGZ_21153	Uncharacterized protein. (439 aa)
	JCGZ_05185	RRM domain-containing protein. (509 aa)
	JCGZ_18046	Uncharacterized protein. (414 aa)

Your Current Organism:

Jatropha curcas

NCBI taxonomy Id: 180498
Other names: J. curcas, Jatropha curcas L.

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
JCGZ_02367	JCGZ_04071	A0A067L8D4	A0A067KUW0	Uncharacterized protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.928
JCGZ_02367	JCGZ_05185	A0A067L8D4	A0A067L2J1	Uncharacterized protein.	RRM domain-containing protein.	0.434
JCGZ_02367	JCGZ_06768	A0A067L8D4	D6BQM7	Uncharacterized protein.	Small nuclear ribonucleoprotein G.	0.640
JCGZ_02367	JCGZ_12252	A0A067L8D4	A0A067K6F1	Uncharacterized protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.928
JCGZ_02367	JCGZ_15993	A0A067L8D4	A0A067KZF2	Uncharacterized protein.	Uncharacterized protein.	0.516
JCGZ_02367	JCGZ_16379	A0A067L8D4	A0A067L7V6	Uncharacterized protein.	Uncharacterized protein.	0.516
JCGZ_02367	JCGZ_16583	A0A067L8D4	A0A067KBK2	Uncharacterized protein.	Matrin-type domain-containing protein.	0.606
JCGZ_02367	JCGZ_18046	A0A067L8D4	A0A067JVQ4	Uncharacterized protein.	Uncharacterized protein.	0.408
JCGZ_02367	JCGZ_23773	A0A067L8D4	A0A067L2Z8	Uncharacterized protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.928
JCGZ_02367	JCGZ_24925	A0A067L8D4	A0A067KXJ1	Uncharacterized protein.	TOG domain-containing protein.	0.785
JCGZ_02367	JCGZ_26257	A0A067L8D4	A0A067JEU6	Uncharacterized protein.	Uncharacterized protein.	0.408
JCGZ_02367	JCGZ_26664	A0A067L8D4	A0A067L3T7	Uncharacterized protein.	Small nuclear ribonucleoprotein G.	0.640
JCGZ_03689	JCGZ_04071	A0A067KTD1	A0A067KUW0	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.408
JCGZ_03689	JCGZ_05185	A0A067KTD1	A0A067L2J1	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	RRM domain-containing protein.	0.920
JCGZ_03689	JCGZ_06768	A0A067KTD1	D6BQM7	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	Small nuclear ribonucleoprotein G.	0.952
JCGZ_03689	JCGZ_09152	A0A067KTD1	A0A067KSP7	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	Sm domain-containing protein.	0.984
JCGZ_03689	JCGZ_11741	A0A067KTD1	A0A067KGH7	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	C3H1-type domain-containing protein.	0.587
JCGZ_03689	JCGZ_12252	A0A067KTD1	A0A067K6F1	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.408
JCGZ_03689	JCGZ_15993	A0A067KTD1	A0A067KZF2	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	Uncharacterized protein.	0.693
JCGZ_03689	JCGZ_16379	A0A067KTD1	A0A067L7V6	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	Uncharacterized protein.	0.693