14 items (Jatropha curcas) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	JCGZ_24735	Uncharacterized protein. (458 aa)
	JCGZ_18225	Uncharacterized protein. (191 aa)
	JCGZ_05745	Uncharacterized protein. (146 aa)
	JCGZ_20928	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family. (146 aa)
	JCGZ_16325	Uncharacterized protein. (80 aa)
	JCGZ_05749	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family. (138 aa)
	JCGZ_05743	Uncharacterized protein. (109 aa)
	JCGZ_24555	Uncharacterized protein. (662 aa)
	JCGZ_01055	RPOLD domain-containing protein. (376 aa)
	JCGZ_06801	RPOLA_N domain-containing protein. (1526 aa)
	JCGZ_08237	Uncharacterized protein. (229 aa)
	JCGZ_07277	Uncharacterized protein. (206 aa)
	JCGZ_13730	Uncharacterized protein. (206 aa)
	JCGZ_26150	Uncharacterized protein. (149 aa)

Your Current Organism:

Jatropha curcas

NCBI taxonomy Id: 180498
Other names: J. curcas, Jatropha curcas L.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
JCGZ_01055	JCGZ_05743	A0A067KWG0	A0A067L757	RPOLD domain-containing protein.	Uncharacterized protein.	0.969
JCGZ_01055	JCGZ_05745	A0A067KWG0	A0A067LAQ0	RPOLD domain-containing protein.	Uncharacterized protein.	0.969
JCGZ_01055	JCGZ_05749	A0A067KWG0	A0A067L7B6	RPOLD domain-containing protein.	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	0.969
JCGZ_01055	JCGZ_06801	A0A067KWG0	A0A067KMK3	RPOLD domain-containing protein.	RPOLA_N domain-containing protein.	0.987
JCGZ_01055	JCGZ_07277	A0A067KWG0	A0A067KBZ2	RPOLD domain-containing protein.	Uncharacterized protein.	0.978
JCGZ_01055	JCGZ_08237	A0A067KWG0	A0A067KL18	RPOLD domain-containing protein.	Uncharacterized protein.	0.999
JCGZ_01055	JCGZ_13730	A0A067KWG0	A0A067K3V6	RPOLD domain-containing protein.	Uncharacterized protein.	0.978
JCGZ_01055	JCGZ_16325	A0A067KWG0	A0A067L7U6	RPOLD domain-containing protein.	Uncharacterized protein.	0.929
JCGZ_01055	JCGZ_18225	A0A067KWG0	A0A067LLD4	RPOLD domain-containing protein.	Uncharacterized protein.	0.987
JCGZ_01055	JCGZ_20928	A0A067KWG0	A0A067L9K4	RPOLD domain-containing protein.	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	0.969
JCGZ_01055	JCGZ_24555	A0A067KWG0	A0A067KWG9	RPOLD domain-containing protein.	Uncharacterized protein.	0.997
JCGZ_01055	JCGZ_24735	A0A067KWG0	A0A067KX36	RPOLD domain-containing protein.	Uncharacterized protein.	0.997
JCGZ_01055	JCGZ_26150	A0A067KWG0	A0A067JS04	RPOLD domain-containing protein.	Uncharacterized protein.	0.999
JCGZ_05743	JCGZ_01055	A0A067L757	A0A067KWG0	Uncharacterized protein.	RPOLD domain-containing protein.	0.969
JCGZ_05743	JCGZ_06801	A0A067L757	A0A067KMK3	Uncharacterized protein.	RPOLA_N domain-containing protein.	0.842
JCGZ_05743	JCGZ_07277	A0A067L757	A0A067KBZ2	Uncharacterized protein.	Uncharacterized protein.	0.854
JCGZ_05743	JCGZ_08237	A0A067L757	A0A067KL18	Uncharacterized protein.	Uncharacterized protein.	0.960
JCGZ_05743	JCGZ_13730	A0A067L757	A0A067K3V6	Uncharacterized protein.	Uncharacterized protein.	0.854
JCGZ_05743	JCGZ_16325	A0A067L757	A0A067L7U6	Uncharacterized protein.	Uncharacterized protein.	0.789
JCGZ_05743	JCGZ_18225	A0A067L757	A0A067LLD4	Uncharacterized protein.	Uncharacterized protein.	0.842