21 items (Jatropha curcas) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	JCGZ_22634	Uncharacterized protein; Belongs to the cyclin family. (595 aa)
	JCGZ_21423	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (450 aa)
	JCGZ_23334	CYCLIN domain-containing protein; Belongs to the cyclin family. (350 aa)
	JCGZ_20563	Uncharacterized protein. (771 aa)
	JCGZ_25039	Aa_trans domain-containing protein. (484 aa)
	JCGZ_13989	Uncharacterized protein. (191 aa)
	JCGZ_18784	Aa_trans domain-containing protein. (491 aa)
	JCGZ_07268	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (483 aa)
	JCGZ_09447	Protein kinase domain-containing protein. (590 aa)
	JCGZ_08334	Protein kinase domain-containing protein. (588 aa)
	JCGZ_12057	Aa_trans domain-containing protein. (465 aa)
	JCGZ_13184	Uncharacterized protein. (599 aa)
	JCGZ_12081	Uncharacterized protein. (296 aa)
	JCGZ_04473	Uncharacterized protein; Belongs to the cyclin family. (424 aa)
	JCGZ_05353	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (417 aa)
	JCGZ_04068	MAT1 domain-containing protein. (180 aa)
	JCGZ_04067	Uncharacterized protein. (918 aa)
	JCGZ_02147	Uncharacterized protein; Belongs to the cyclin family. (378 aa)
	JCGZ_17243	Protein kinase domain-containing protein. (642 aa)
	JCGZ_05562	C2H2-type domain-containing protein. (208 aa)
	JCGZ_01304	Aa_trans domain-containing protein. (474 aa)

Your Current Organism:

Jatropha curcas

NCBI taxonomy Id: 180498
Other names: J. curcas, Jatropha curcas L.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
JCGZ_02147	JCGZ_04067	A0A067L7U1	A0A067L3T5	Uncharacterized protein; Belongs to the cyclin family.	Uncharacterized protein.	0.615
JCGZ_02147	JCGZ_04068	A0A067L7U1	A0A067L2M4	Uncharacterized protein; Belongs to the cyclin family.	MAT1 domain-containing protein.	0.615
JCGZ_02147	JCGZ_05353	A0A067L7U1	A0A067L1C4	Uncharacterized protein; Belongs to the cyclin family.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.801
JCGZ_02147	JCGZ_05562	A0A067L7U1	A0A067LHM1	Uncharacterized protein; Belongs to the cyclin family.	C2H2-type domain-containing protein.	0.664
JCGZ_02147	JCGZ_08334	A0A067L7U1	A0A067KKA1	Uncharacterized protein; Belongs to the cyclin family.	Protein kinase domain-containing protein.	0.696
JCGZ_02147	JCGZ_09447	A0A067L7U1	A0A067KJY4	Uncharacterized protein; Belongs to the cyclin family.	Protein kinase domain-containing protein.	0.696
JCGZ_02147	JCGZ_12081	A0A067L7U1	A0A067KLW9	Uncharacterized protein; Belongs to the cyclin family.	Uncharacterized protein.	0.674
JCGZ_02147	JCGZ_13989	A0A067L7U1	A0A067JZN6	Uncharacterized protein; Belongs to the cyclin family.	Uncharacterized protein.	0.610
JCGZ_02147	JCGZ_17243	A0A067L7U1	A0A067LAY5	Uncharacterized protein; Belongs to the cyclin family.	Protein kinase domain-containing protein.	0.696
JCGZ_02147	JCGZ_21423	A0A067L7U1	A0A067JB09	Uncharacterized protein; Belongs to the cyclin family.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.640
JCGZ_02147	JCGZ_23334	A0A067L7U1	A0A067JHS6	Uncharacterized protein; Belongs to the cyclin family.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.797
JCGZ_04067	JCGZ_02147	A0A067L3T5	A0A067L7U1	Uncharacterized protein.	Uncharacterized protein; Belongs to the cyclin family.	0.615
JCGZ_04067	JCGZ_04473	A0A067L3T5	A0A067KU87	Uncharacterized protein.	Uncharacterized protein; Belongs to the cyclin family.	0.615
JCGZ_04067	JCGZ_05353	A0A067L3T5	A0A067L1C4	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.991
JCGZ_04067	JCGZ_05562	A0A067L3T5	A0A067LHM1	Uncharacterized protein.	C2H2-type domain-containing protein.	0.987
JCGZ_04067	JCGZ_07268	A0A067L3T5	A0A067KC27	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.500
JCGZ_04067	JCGZ_12081	A0A067L3T5	A0A067KLW9	Uncharacterized protein.	Uncharacterized protein.	0.984
JCGZ_04067	JCGZ_13184	A0A067L3T5	A0A067KLF7	Uncharacterized protein.	Uncharacterized protein.	0.991
JCGZ_04067	JCGZ_20563	A0A067L3T5	A0A067JNF0	Uncharacterized protein.	Uncharacterized protein.	0.923
JCGZ_04067	JCGZ_21423	A0A067L3T5	A0A067JB09	Uncharacterized protein.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.991