10 items (Jatropha curcas) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	JCGZ_11931	RECA_2 domain-containing protein. (313 aa)
	JCGZ_05604	RECA_2 domain-containing protein. (371 aa)
	JCGZ_01627	Uncharacterized protein. (893 aa)
	JCGZ_08670	RECA_2 domain-containing protein. (296 aa)
	JCGZ_07333	Meiotic nuclear division protein 1 homolog; Required for proper homologous chromosome pairing and efficient cross-over and intragenic recombination during meiosis. Belongs to the MND1 family. (226 aa)
	JCGZ_25002	VARLMGL domain-containing protein. (415 aa)
	JCGZ_14541	RECA_2 domain-containing protein. (374 aa)
	JCGZ_08455	Uncharacterized protein. (353 aa)
	JCGZ_09298	Uncharacterized protein. (304 aa)
	JCGZ_05648	RECA_2 domain-containing protein. (318 aa)

Your Current Organism:

Jatropha curcas

NCBI taxonomy Id: 180498
Other names: J. curcas, Jatropha curcas L.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
JCGZ_01627	JCGZ_05604	A0A067L520	A0A067L6T9	Uncharacterized protein.	RECA_2 domain-containing protein.	0.663
JCGZ_01627	JCGZ_05648	A0A067L520	A0A067L6U7	Uncharacterized protein.	RECA_2 domain-containing protein.	0.666
JCGZ_01627	JCGZ_07333	A0A067L520	A0A067KCC1	Uncharacterized protein.	Meiotic nuclear division protein 1 homolog; Required for proper homologous chromosome pairing and efficient cross-over and intragenic recombination during meiosis. Belongs to the MND1 family.	0.406
JCGZ_01627	JCGZ_08670	A0A067L520	A0A067KJJ0	Uncharacterized protein.	RECA_2 domain-containing protein.	0.548
JCGZ_01627	JCGZ_14541	A0A067L520	A0A067K931	Uncharacterized protein.	RECA_2 domain-containing protein.	0.715
JCGZ_05604	JCGZ_01627	A0A067L6T9	A0A067L520	RECA_2 domain-containing protein.	Uncharacterized protein.	0.663
JCGZ_05604	JCGZ_05648	A0A067L6T9	A0A067L6U7	RECA_2 domain-containing protein.	RECA_2 domain-containing protein.	0.495
JCGZ_05604	JCGZ_07333	A0A067L6T9	A0A067KCC1	RECA_2 domain-containing protein.	Meiotic nuclear division protein 1 homolog; Required for proper homologous chromosome pairing and efficient cross-over and intragenic recombination during meiosis. Belongs to the MND1 family.	0.539
JCGZ_05604	JCGZ_08670	A0A067L6T9	A0A067KJJ0	RECA_2 domain-containing protein.	RECA_2 domain-containing protein.	0.775
JCGZ_05604	JCGZ_11931	A0A067L6T9	A0A067KQ82	RECA_2 domain-containing protein.	RECA_2 domain-containing protein.	0.909
JCGZ_05604	JCGZ_14541	A0A067L6T9	A0A067K931	RECA_2 domain-containing protein.	RECA_2 domain-containing protein.	0.784
JCGZ_05648	JCGZ_01627	A0A067L6U7	A0A067L520	RECA_2 domain-containing protein.	Uncharacterized protein.	0.666
JCGZ_05648	JCGZ_05604	A0A067L6U7	A0A067L6T9	RECA_2 domain-containing protein.	RECA_2 domain-containing protein.	0.495
JCGZ_05648	JCGZ_07333	A0A067L6U7	A0A067KCC1	RECA_2 domain-containing protein.	Meiotic nuclear division protein 1 homolog; Required for proper homologous chromosome pairing and efficient cross-over and intragenic recombination during meiosis. Belongs to the MND1 family.	0.454
JCGZ_05648	JCGZ_08670	A0A067L6U7	A0A067KJJ0	RECA_2 domain-containing protein.	RECA_2 domain-containing protein.	0.780
JCGZ_05648	JCGZ_11931	A0A067L6U7	A0A067KQ82	RECA_2 domain-containing protein.	RECA_2 domain-containing protein.	0.863
JCGZ_05648	JCGZ_14541	A0A067L6U7	A0A067K931	RECA_2 domain-containing protein.	RECA_2 domain-containing protein.	0.839
JCGZ_07333	JCGZ_01627	A0A067KCC1	A0A067L520	Meiotic nuclear division protein 1 homolog; Required for proper homologous chromosome pairing and efficient cross-over and intragenic recombination during meiosis. Belongs to the MND1 family.	Uncharacterized protein.	0.406
JCGZ_07333	JCGZ_05604	A0A067KCC1	A0A067L6T9	Meiotic nuclear division protein 1 homolog; Required for proper homologous chromosome pairing and efficient cross-over and intragenic recombination during meiosis. Belongs to the MND1 family.	RECA_2 domain-containing protein.	0.539
JCGZ_07333	JCGZ_05648	A0A067KCC1	A0A067L6U7	Meiotic nuclear division protein 1 homolog; Required for proper homologous chromosome pairing and efficient cross-over and intragenic recombination during meiosis. Belongs to the MND1 family.	RECA_2 domain-containing protein.	0.454