11 items (Jatropha curcas) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	JCGZ_08666	Uncharacterized protein. (278 aa)
	JCGZ_06916	Uncharacterized protein. (374 aa)
	JCGZ_11855	Uncharacterized protein. (248 aa)
	JCGZ_23230	Thioredoxin domain-containing protein. (1085 aa)
	JCGZ_18641	Uncharacterized protein. (308 aa)
	JCGZ_21357	Flavokinase domain-containing protein. (380 aa)
	JCGZ_03347	Uncharacterized protein. (364 aa)
	JCGZ_20596	Uncharacterized protein. (377 aa)
	JCGZ_11856	Uncharacterized protein. (262 aa)
	JCGZ_11363	Uncharacterized protein. (318 aa)
	JCGZ_09799	Uncharacterized protein. (354 aa)

Your Current Organism:

Jatropha curcas

NCBI taxonomy Id: 180498
Other names: J. curcas, Jatropha curcas L.

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
JCGZ_08666	JCGZ_11856	A0A067KJU5	A0A067LFD3	Uncharacterized protein.	Uncharacterized protein.	0.447
JCGZ_08666	JCGZ_18641	A0A067KJU5	A0A067K0I8	Uncharacterized protein.	Uncharacterized protein.	0.490
JCGZ_09799	JCGZ_21357	A0A067KJL3	A0A067JAP5	Uncharacterized protein.	Flavokinase domain-containing protein.	0.914
JCGZ_11363	JCGZ_11855	A0A067K4D0	A0A067LC18	Uncharacterized protein.	Uncharacterized protein.	0.463
JCGZ_11363	JCGZ_11856	A0A067K4D0	A0A067LFD3	Uncharacterized protein.	Uncharacterized protein.	0.451
JCGZ_11855	JCGZ_11363	A0A067LC18	A0A067K4D0	Uncharacterized protein.	Uncharacterized protein.	0.463
JCGZ_11856	JCGZ_08666	A0A067LFD3	A0A067KJU5	Uncharacterized protein.	Uncharacterized protein.	0.447
JCGZ_11856	JCGZ_11363	A0A067LFD3	A0A067K4D0	Uncharacterized protein.	Uncharacterized protein.	0.451
JCGZ_18641	JCGZ_08666	A0A067K0I8	A0A067KJU5	Uncharacterized protein.	Uncharacterized protein.	0.490
JCGZ_21357	JCGZ_09799	A0A067JAP5	A0A067KJL3	Flavokinase domain-containing protein.	Uncharacterized protein.	0.914