10 items (Jatropha curcas) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	JCGZ_08152	Uncharacterized protein. (321 aa)
	JCGZ_01124	Uncharacterized protein. (464 aa)
	JCGZ_24296	Uncharacterized protein. (647 aa)
	JCGZ_20592	Uncharacterized protein. (1873 aa)
	JCGZ_20567	ARID domain-containing protein. (628 aa)
	JCGZ_10764	Uncharacterized protein. (509 aa)
	JCGZ_14376	Uncharacterized protein. (638 aa)
	JCGZ_09529	Uncharacterized protein. (316 aa)
	JCGZ_07539	ARID domain-containing protein. (750 aa)
	JCGZ_08027	Uncharacterized protein. (443 aa)

Your Current Organism:

Jatropha curcas

NCBI taxonomy Id: 180498
Other names: J. curcas, Jatropha curcas L.

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
JCGZ_01124	JCGZ_08152	A0A067KTA1	A0A067KKU0	Uncharacterized protein.	Uncharacterized protein.	0.862
JCGZ_01124	JCGZ_09529	A0A067KTA1	A0A067KWU9	Uncharacterized protein.	Uncharacterized protein.	0.863
JCGZ_08152	JCGZ_01124	A0A067KKU0	A0A067KTA1	Uncharacterized protein.	Uncharacterized protein.	0.862
JCGZ_08152	JCGZ_09529	A0A067KKU0	A0A067KWU9	Uncharacterized protein.	Uncharacterized protein.	0.864
JCGZ_08152	JCGZ_24296	A0A067KKU0	A0A067JQ21	Uncharacterized protein.	Uncharacterized protein.	0.420
JCGZ_09529	JCGZ_01124	A0A067KWU9	A0A067KTA1	Uncharacterized protein.	Uncharacterized protein.	0.863
JCGZ_09529	JCGZ_08152	A0A067KWU9	A0A067KKU0	Uncharacterized protein.	Uncharacterized protein.	0.864
JCGZ_09529	JCGZ_10764	A0A067KWU9	A0A067LF61	Uncharacterized protein.	Uncharacterized protein.	0.451
JCGZ_10764	JCGZ_09529	A0A067LF61	A0A067KWU9	Uncharacterized protein.	Uncharacterized protein.	0.451
JCGZ_24296	JCGZ_08152	A0A067JQ21	A0A067KKU0	Uncharacterized protein.	Uncharacterized protein.	0.420