57 items (Jatropha curcas) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	JCGZ_13184	Uncharacterized protein. (599 aa)
	JCGZ_21412	Uncharacterized protein. (970 aa)
	JCGZ_21437	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (841 aa)
	JCGZ_21423	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (450 aa)
	JCGZ_21942	Helicase ATP-binding domain-containing protein. (235 aa)
	JCGZ_21419	Uncharacterized protein. (702 aa)
	JHL18I08.10	JHL18I08.10 protein. (262 aa)
	JCGZ_22125	RPOLD domain-containing protein. (317 aa)
	JCGZ_15155	Uncharacterized protein. (524 aa)
	JCGZ_02409	Uncharacterized protein. (647 aa)
	JCGZ_05562	C2H2-type domain-containing protein. (208 aa)
	JCGZ_10967	Phorbol-ester/DAG-type domain-containing protein. (568 aa)
	JCGZ_06535	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family. (104 aa)
	JCGZ_23792	SANTA domain-containing protein. (331 aa)
	JCGZ_17419	DUF4101 domain-containing protein. (834 aa)
	JCGZ_05745	Uncharacterized protein. (146 aa)
	JCGZ_05475	Uncharacterized protein. (166 aa)
	JCGZ_20928	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family. (146 aa)
	JCGZ_24513	Uncharacterized protein. (227 aa)
	JCGZ_16325	Uncharacterized protein. (80 aa)
	JCGZ_03950	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (533 aa)
	JCGZ_05749	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family. (138 aa)
	JCGZ_05743	Uncharacterized protein. (109 aa)
	JCGZ_02928	Uncharacterized protein. (176 aa)
	JCGZ_25243	Transcription elongation factor SPT5. (1046 aa)
	JCGZ_25198	RNA_pol_Rpb2_6 domain-containing protein. (152 aa)
	JCGZ_23778	Uncharacterized protein. (191 aa)
	JCGZ_04068	MAT1 domain-containing protein. (180 aa)
	JCGZ_01090	Uncharacterized protein. (544 aa)
	JCGZ_10526	SHS2_Rpb7-N domain-containing protein. (176 aa)
	JCGZ_07086	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1209 aa)
	JCGZ_08747	Spt4 domain-containing protein. (158 aa)
	JCGZ_12081	Uncharacterized protein. (296 aa)
	JCGZ_23109	Uncharacterized protein. (1283 aa)
	JCGZ_23334	CYCLIN domain-containing protein; Belongs to the cyclin family. (350 aa)
	JCGZ_05295	Helicase ATP-binding domain-containing protein. (758 aa)
	JCGZ_25031	FCP1 homology domain-containing protein. (317 aa)
	JCGZ_25745	Nuclear cap-binding protein subunit 2. (252 aa)
	JCGZ_20513	Uncharacterized protein. (679 aa)
	JCGZ_20563	Uncharacterized protein. (771 aa)
	JCGZ_25032	DRBM domain-containing protein. (496 aa)
	JCGZ_23953	Uncharacterized protein. (275 aa)
	JCGZ_25965	MIF4G domain-containing protein. (868 aa)
	JCGZ_26150	Uncharacterized protein. (149 aa)
	JCGZ_23577	RPOL4c domain-containing protein. (164 aa)
	JCGZ_18978	Uncharacterized protein; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (255 aa)
	JCGZ_20740	Uncharacterized protein. (70 aa)
	JCGZ_21088	Uncharacterized protein. (256 aa)
	JCGZ_22486	Uncharacterized protein. (238 aa)
	JCGZ_16156	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (530 aa)
	JCGZ_13730	Uncharacterized protein. (206 aa)
	JCGZ_11577	RNA polymerase II C-terminal domain phosphatase-like; This promotes the activity of RNA polymerase II. (333 aa)
	JCGZ_07277	Uncharacterized protein. (206 aa)
	JCGZ_16173	Uncharacterized protein. (1790 aa)
	JCGZ_09190	RNA_pol_L_2 domain-containing protein. (170 aa)
	JCGZ_09049	SANTA domain-containing protein. (588 aa)
	JCGZ_13822	RNA polymerase II C-terminal domain phosphatase-like; This promotes the activity of RNA polymerase II. (470 aa)

Your Current Organism:

Jatropha curcas

NCBI taxonomy Id: 180498
Other names: J. curcas, Jatropha curcas L.

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
JCGZ_01090	JCGZ_02928	A0A067KWI7	A0A067L4T0	Uncharacterized protein.	Uncharacterized protein.	0.769
JCGZ_01090	JCGZ_03950	A0A067KWI7	A0A067L7G8	Uncharacterized protein.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.894
JCGZ_01090	JCGZ_04068	A0A067KWI7	A0A067L2M4	Uncharacterized protein.	MAT1 domain-containing protein.	0.923
JCGZ_01090	JCGZ_05295	A0A067KWI7	A0A067JKA4	Uncharacterized protein.	Helicase ATP-binding domain-containing protein.	0.924
JCGZ_01090	JCGZ_05475	A0A067KWI7	A0A067L9T2	Uncharacterized protein.	Uncharacterized protein.	0.769
JCGZ_01090	JCGZ_05562	A0A067KWI7	A0A067LHM1	Uncharacterized protein.	C2H2-type domain-containing protein.	0.968
JCGZ_01090	JCGZ_05743	A0A067KWI7	A0A067L757	Uncharacterized protein.	Uncharacterized protein.	0.755
JCGZ_01090	JCGZ_05745	A0A067KWI7	A0A067LAQ0	Uncharacterized protein.	Uncharacterized protein.	0.755
JCGZ_01090	JCGZ_05749	A0A067KWI7	A0A067L7B6	Uncharacterized protein.	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	0.755
JCGZ_01090	JCGZ_06535	A0A067KWI7	A0A067LEF4	Uncharacterized protein.	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.	0.554
JCGZ_01090	JCGZ_07086	A0A067KWI7	A0A067KMJ5	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.827
JCGZ_01090	JCGZ_07277	A0A067KWI7	A0A067KBZ2	Uncharacterized protein.	Uncharacterized protein.	0.800
JCGZ_01090	JCGZ_08747	A0A067KWI7	A0A067KM71	Uncharacterized protein.	Spt4 domain-containing protein.	0.554
JCGZ_01090	JCGZ_09049	A0A067KWI7	A0A067KH99	Uncharacterized protein.	SANTA domain-containing protein.	0.707
JCGZ_01090	JCGZ_09190	A0A067KWI7	A0A067KFJ8	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.938
JCGZ_01090	JCGZ_10526	A0A067KWI7	A0A067KVA5	Uncharacterized protein.	SHS2_Rpb7-N domain-containing protein.	0.758
JCGZ_01090	JCGZ_10967	A0A067KWI7	A0A067LH36	Uncharacterized protein.	Phorbol-ester/DAG-type domain-containing protein.	0.707
JCGZ_01090	JCGZ_12081	A0A067KWI7	A0A067KLW9	Uncharacterized protein.	Uncharacterized protein.	0.968
JCGZ_01090	JCGZ_13184	A0A067KWI7	A0A067KLF7	Uncharacterized protein.	Uncharacterized protein.	0.969
JCGZ_01090	JCGZ_13730	A0A067KWI7	A0A067K3V6	Uncharacterized protein.	Uncharacterized protein.	0.800