21 items (Jatropha curcas) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	JCGZ_13162	Uncharacterized protein. (951 aa)
	JCGZ_21737	Serine/threonine-protein phosphatase. (306 aa)
	JCGZ_21768	Uncharacterized protein. (607 aa)
	JCGZ_21159	Uncharacterized protein. (212 aa)
	JCGZ_05873	Vac14_Fab1_bd domain-containing protein. (587 aa)
	JCGZ_03038	Serine/threonine-protein phosphatase. (313 aa)
	JCGZ_21036	Serine/threonine-protein phosphatase. (313 aa)
	JCGZ_14088	Ubiquitin-like domain-containing protein. (156 aa)
	JCGZ_24311	Ubiquitin-like domain-containing protein. (163 aa)
	JCGZ_17773	Ubiquitin-like domain-containing protein. (156 aa)
	JCGZ_18023	Uncharacterized protein. (202 aa)
	JCGZ_11552	Serine/threonine-protein phosphatase. (306 aa)
	JCGZ_18306	Uncharacterized protein. (587 aa)
	JCGZ_13019	Uncharacterized protein. (109 aa)
	JCGZ_11521	Uncharacterized protein. (110 aa)
	JCGZ_13757	Uncharacterized protein. (234 aa)
	JCGZ_13006	Uncharacterized protein. (911 aa)
	JCGZ_00989	COR domain-containing protein. (1160 aa)
	JCGZ_00861	TMEM189_B_dmain domain-containing protein. (312 aa)
	JCGZ_17220	Ubiquitin-like domain-containing protein. (156 aa)
	JCGZ_15075	PsaL domain-containing protein. (219 aa)

Your Current Organism:

Jatropha curcas

NCBI taxonomy Id: 180498
Other names: J. curcas, Jatropha curcas L.

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
JCGZ_00861	JCGZ_14088	A0A067L4T9	A0A067JWR6	TMEM189_B_dmain domain-containing protein.	Ubiquitin-like domain-containing protein.	0.824
JCGZ_00861	JCGZ_17220	A0A067L4T9	A0A067LEE4	TMEM189_B_dmain domain-containing protein.	Ubiquitin-like domain-containing protein.	0.824
JCGZ_00861	JCGZ_17773	A0A067L4T9	A0A067K2Y9	TMEM189_B_dmain domain-containing protein.	Ubiquitin-like domain-containing protein.	0.824
JCGZ_00861	JCGZ_24311	A0A067L4T9	A0A067JY69	TMEM189_B_dmain domain-containing protein.	Ubiquitin-like domain-containing protein.	0.824
JCGZ_00989	JCGZ_14088	A0A067KSZ9	A0A067JWR6	COR domain-containing protein.	Ubiquitin-like domain-containing protein.	0.474
JCGZ_00989	JCGZ_17220	A0A067KSZ9	A0A067LEE4	COR domain-containing protein.	Ubiquitin-like domain-containing protein.	0.474
JCGZ_00989	JCGZ_17773	A0A067KSZ9	A0A067K2Y9	COR domain-containing protein.	Ubiquitin-like domain-containing protein.	0.474
JCGZ_00989	JCGZ_24311	A0A067KSZ9	A0A067JY69	COR domain-containing protein.	Ubiquitin-like domain-containing protein.	0.474
JCGZ_03038	JCGZ_05873	A0A067JPG0	A0A067JKU6	Serine/threonine-protein phosphatase.	Vac14_Fab1_bd domain-containing protein.	0.774
JCGZ_03038	JCGZ_13006	A0A067JPG0	A0A067KL26	Serine/threonine-protein phosphatase.	Uncharacterized protein.	0.774
JCGZ_03038	JCGZ_13019	A0A067JPG0	A0A067KD83	Serine/threonine-protein phosphatase.	Uncharacterized protein.	0.774
JCGZ_03038	JCGZ_13162	A0A067JPG0	A0A067K911	Serine/threonine-protein phosphatase.	Uncharacterized protein.	0.774
JCGZ_03038	JCGZ_18306	A0A067JPG0	A0A067KAU6	Serine/threonine-protein phosphatase.	Uncharacterized protein.	0.774
JCGZ_05873	JCGZ_03038	A0A067JKU6	A0A067JPG0	Vac14_Fab1_bd domain-containing protein.	Serine/threonine-protein phosphatase.	0.774
JCGZ_05873	JCGZ_11552	A0A067JKU6	A0A067K4M9	Vac14_Fab1_bd domain-containing protein.	Serine/threonine-protein phosphatase.	0.774
JCGZ_05873	JCGZ_21036	A0A067JKU6	A0A067JVV1	Vac14_Fab1_bd domain-containing protein.	Serine/threonine-protein phosphatase.	0.774
JCGZ_05873	JCGZ_21737	A0A067JKU6	A0A067JBS5	Vac14_Fab1_bd domain-containing protein.	Serine/threonine-protein phosphatase.	0.774
JCGZ_11521	JCGZ_14088	A0A067KFW1	A0A067JWR6	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.474
JCGZ_11521	JCGZ_17220	A0A067KFW1	A0A067LEE4	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.474
JCGZ_11521	JCGZ_17773	A0A067KFW1	A0A067K2Y9	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.474