47 items (Jatropha curcas) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	JCGZ_22238	Uncharacterized protein. (379 aa)
	JCGZ_12419	Uncharacterized protein. (922 aa)
	JCGZ_08552	Uncharacterized protein. (664 aa)
	JCGZ_23831	Uncharacterized protein. (1097 aa)
	JCGZ_06559	Uncharacterized protein. (701 aa)
	JCGZ_06638	Uncharacterized protein. (385 aa)
	JCGZ_01303	WIYLD domain-containing protein. (260 aa)
	JCGZ_15881	PWWP domain-containing protein. (260 aa)
	JCGZ_22400	Uncharacterized protein. (392 aa)
	JCGZ_01302	WIYLD domain-containing protein. (245 aa)
	JCGZ_03460	VEFS-Box domain-containing protein. (384 aa)
	JCGZ_05678	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
	JCGZ_05629	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
	JCGZ_26876	Uncharacterized protein. (689 aa)
	JCGZ_03479	Uncharacterized protein. (1030 aa)
	JCGZ_08001	Uncharacterized protein. (1269 aa)
	JCGZ_24601	Uncharacterized protein. (673 aa)
	JCGZ_02385	WIYLD domain-containing protein. (99 aa)
	JCGZ_00805	WD_REPEATS_REGION domain-containing protein. (372 aa)
	JCGZ_04970	Uncharacterized protein. (446 aa)
	JCGZ_08754	Uncharacterized protein. (176 aa)
	JCGZ_04086	Uncharacterized protein. (227 aa)
	JCGZ_02677	Uncharacterized protein. (330 aa)
	JCGZ_00983	Uncharacterized protein. (1383 aa)
	JCGZ_09392	Uncharacterized protein. (219 aa)
	JCGZ_08756	Uncharacterized protein. (434 aa)
	JCGZ_12155	Uncharacterized protein. (2200 aa)
	JCGZ_19243	Uncharacterized protein; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. SET2 subfamily. (370 aa)
	JCGZ_12891	Uncharacterized protein. (674 aa)
	JCGZ_12860	Uncharacterized protein. (639 aa)
	JCGZ_12059	Uncharacterized protein. (471 aa)
	JCGZ_13791	Uncharacterized protein. (755 aa)
	JCGZ_20287	SET domain-containing protein. (2450 aa)
	JCGZ_15505	Uncharacterized protein. (342 aa)
	JCGZ_14034	SET domain-containing protein. (842 aa)
	JCGZ_20396	Uncharacterized protein. (434 aa)
	JCGZ_16590	PWWP domain-containing protein. (335 aa)
	JCGZ_25088	Uncharacterized protein. (924 aa)
	JCGZ_14263	Uncharacterized protein; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX/MLL subfamily. (1029 aa)
	JCGZ_23098	Uncharacterized protein. (844 aa)
	JCGZ_17634	Uncharacterized protein. (919 aa)
	JCGZ_26316	Uncharacterized protein. (602 aa)
	JCGZ_23561	Uncharacterized protein. (420 aa)
	JCGZ_26304	VEFS-Box domain-containing protein. (645 aa)
	JCGZ_25944	B30.2/SPRY domain-containing protein. (447 aa)
	JCGZ_26317	Uncharacterized protein. (269 aa)
	JCGZ_25977	Uncharacterized protein; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX/MLL subfamily. (1085 aa)

Your Current Organism:

Jatropha curcas

NCBI taxonomy Id: 180498
Other names: J. curcas, Jatropha curcas L.

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
JCGZ_00805	JCGZ_00983	A0A067KVM1	A0A067KSR4	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.733
JCGZ_00805	JCGZ_01302	A0A067KVM1	A0A067L8T6	WD_REPEATS_REGION domain-containing protein.	WIYLD domain-containing protein.	0.680
JCGZ_00805	JCGZ_01303	A0A067KVM1	A0A067LC66	WD_REPEATS_REGION domain-containing protein.	WIYLD domain-containing protein.	0.680
JCGZ_00805	JCGZ_02385	A0A067KVM1	A0A067KW62	WD_REPEATS_REGION domain-containing protein.	WIYLD domain-containing protein.	0.680
JCGZ_00805	JCGZ_02677	A0A067KVM1	A0A067KU34	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.680
JCGZ_00805	JCGZ_03460	A0A067KVM1	A0A067L743	WD_REPEATS_REGION domain-containing protein.	VEFS-Box domain-containing protein.	0.987
JCGZ_00805	JCGZ_03479	A0A067KVM1	A0A067KY84	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.680
JCGZ_00805	JCGZ_04086	A0A067KVM1	A0A067KUX1	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.671
JCGZ_00805	JCGZ_05629	A0A067KVM1	A0A067L6W3	WD_REPEATS_REGION domain-containing protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.778
JCGZ_00805	JCGZ_05678	A0A067KVM1	A0A067L711	WD_REPEATS_REGION domain-containing protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.778
JCGZ_00805	JCGZ_06559	A0A067KVM1	A0A067LE93	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.680
JCGZ_00805	JCGZ_08001	A0A067KVM1	A0A067KWV1	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.671
JCGZ_00805	JCGZ_08552	A0A067KVM1	A0A067LNY0	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.680
JCGZ_00805	JCGZ_08754	A0A067KVM1	A0A067KV10	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.698
JCGZ_00805	JCGZ_08756	A0A067KVM1	A0A067KJ03	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.698
JCGZ_00805	JCGZ_09392	A0A067KVM1	A0A067KJU2	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.723
JCGZ_00805	JCGZ_12059	A0A067KVM1	A0A067K9K4	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.680
JCGZ_00805	JCGZ_12155	A0A067KVM1	A0A067KCX7	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.723
JCGZ_00805	JCGZ_12419	A0A067KVM1	A0A067KAC2	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.987
JCGZ_00805	JCGZ_12860	A0A067KVM1	A0A067KAR6	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.680