66 items (Jatropha curcas) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	JCGZ_13065	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (1042 aa)
	JCGZ_09030	Histone H2B; Belongs to the histone H2B family. (139 aa)
	JCGZ_06976	Toprim domain-containing protein. (1128 aa)
	JCGZ_12965	DDT domain-containing protein. (676 aa)
	JCGZ_11089	3'-5' exonuclease domain-containing protein. (211 aa)
	JCGZ_02766	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (869 aa)
	JCGZ_04990	Uncharacterized protein. (1252 aa)
	JCGZ_15699	14_3_3 domain-containing protein; Belongs to the 14-3-3 family. (262 aa)
	JCGZ_15794	14_3_3 domain-containing protein; Belongs to the 14-3-3 family. (253 aa)
	JCGZ_15820	14_3_3 domain-containing protein; Belongs to the 14-3-3 family. (260 aa)
	JCGZ_01087	3'-5' exonuclease domain-containing protein. (323 aa)
	JCGZ_22344	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (660 aa)
	JCGZ_05414	Histone domain-containing protein; Belongs to the histone H2B family. (259 aa)
	JCGZ_05558	3'-5' exonuclease domain-containing protein. (162 aa)
	JCGZ_05559	3'-5' exonuclease domain-containing protein. (252 aa)
	JCGZ_05673	Histone H2B; Belongs to the histone H2B family. (152 aa)
	JCGZ_24924	14_3_3 domain-containing protein; Belongs to the 14-3-3 family. (261 aa)
	JCGZ_14161	NAC domain-containing protein. (899 aa)
	JCGZ_13256	DUF1767 domain-containing protein. (357 aa)
	JCGZ_14011	Uncharacterized protein. (806 aa)
	JCGZ_17918	Helicase C-terminal domain-containing protein. (359 aa)
	JCGZ_23960	Uncharacterized protein. (223 aa)
	JCGZ_19300	DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (610 aa)
	JCGZ_25415	Uncharacterized protein. (102 aa)
	JCGZ_14167	Uncharacterized protein. (396 aa)
	JCGZ_17919	Uncharacterized protein. (1162 aa)
	JCGZ_02834	NAC domain-containing protein. (157 aa)
	JCGZ_21563	14_3_3 domain-containing protein; Belongs to the 14-3-3 family. (262 aa)
	JCGZ_02835	NAC domain-containing protein. (161 aa)
	JCGZ_23244	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (614 aa)
	JCGZ_23314	Uncharacterized protein. (275 aa)
	JCGZ_23320	Uncharacterized protein. (623 aa)
	JCGZ_21871	Protein kinase domain-containing protein. (672 aa)
	JCGZ_07337	Uncharacterized protein. (992 aa)
	JCGZ_14765	NAC domain-containing protein. (61 aa)
	JCGZ_14160	NAC domain-containing protein. (533 aa)
	JCGZ_11729	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (622 aa)
	JCGZ_14165	NAC transcription factor 069. (201 aa)
	JCGZ_08268	NAC transcription factor 054. (573 aa)
	JCGZ_17675	NAC transcription factor 009. (287 aa)
	JCGZ_14163	NAC transcription factor 073. (375 aa)
	JCGZ_14164	NAC transcription factor 068. (202 aa)
	JCGZ_02538	NAC transcription factor 075. (364 aa)
	JCGZ_23886	NAC transcription factor 070. (147 aa)
	JCGZ_20334	NAC transcription factor 055. (605 aa)
	NAM	NAC transcription factor 050. (394 aa)
	JCGZ_14162	NAC transcription factor 072. (355 aa)
	JCGZ_14159	NAC transcription factor 067. (180 aa)
	JCGZ_02541	NAC transcription factor 076. (378 aa)
	JCGZ_11873	Ephrin_rec_like domain-containing protein. (923 aa)
	JCGZ_17267	HTH_40 domain-containing protein. (248 aa)
	JCGZ_00039	3'-5' exonuclease domain-containing protein. (212 aa)
	JCGZ_14739	14_3_3 domain-containing protein; Belongs to the 14-3-3 family. (260 aa)
	JCGZ_14166	NAC domain-containing protein. (429 aa)
	JCGZ_05667	Histone H2B; Belongs to the histone H2B family. (147 aa)
	JCGZ_05422	Histone H2B; Belongs to the histone H2B family. (143 aa)
	JCGZ_15866	14_3_3 domain-containing protein; Belongs to the 14-3-3 family. (253 aa)
	JCGZ_01566	Histone H2B; Belongs to the histone H2B family. (138 aa)
	JCGZ_07468	Rep-A_N domain-containing protein. (101 aa)
	JCGZ_12150	Uncharacterized protein. (967 aa)
	JCGZ_12969	14_3_3 domain-containing protein; Belongs to the 14-3-3 family. (264 aa)
	JCGZ_07712	Ephrin_rec_like domain-containing protein. (1446 aa)
	JCGZ_18684	14_3_3 domain-containing protein; Belongs to the 14-3-3 family. (252 aa)
	JCGZ_07693	Uncharacterized protein. (258 aa)
	JCGZ_17133	Histone domain-containing protein; Belongs to the histone H2B family. (112 aa)
	JCGZ_11091	3'-5' exonuclease domain-containing protein. (121 aa)

Your Current Organism:

Jatropha curcas

NCBI taxonomy Id: 180498
Other names: J. curcas, Jatropha curcas L.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
JCGZ_00039	JCGZ_06976	A0A067LID1	A0A067KM90	3'-5' exonuclease domain-containing protein.	Toprim domain-containing protein.	0.538
JCGZ_00039	JCGZ_12150	A0A067LID1	A0A067KCX3	3'-5' exonuclease domain-containing protein.	Uncharacterized protein.	0.427
JCGZ_00039	JCGZ_12965	A0A067LID1	A0A067KM95	3'-5' exonuclease domain-containing protein.	DDT domain-containing protein.	0.404
JCGZ_00039	JCGZ_13065	A0A067LID1	A0A067KE76	3'-5' exonuclease domain-containing protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.555
JCGZ_00039	JCGZ_13256	A0A067LID1	A0A067K7X7	3'-5' exonuclease domain-containing protein.	DUF1767 domain-containing protein.	0.536
JCGZ_00039	JCGZ_14011	A0A067LID1	A0A067K7L6	3'-5' exonuclease domain-containing protein.	Uncharacterized protein.	0.427
JCGZ_00039	JCGZ_19300	A0A067LID1	A0A067JZR5	3'-5' exonuclease domain-containing protein.	DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family.	0.538
JCGZ_00039	JCGZ_23314	A0A067LID1	A0A067JHQ7	3'-5' exonuclease domain-containing protein.	Uncharacterized protein.	0.404
JCGZ_01087	JCGZ_06976	A0A067L4A5	A0A067KM90	3'-5' exonuclease domain-containing protein.	Toprim domain-containing protein.	0.538
JCGZ_01087	JCGZ_12150	A0A067L4A5	A0A067KCX3	3'-5' exonuclease domain-containing protein.	Uncharacterized protein.	0.427
JCGZ_01087	JCGZ_12965	A0A067L4A5	A0A067KM95	3'-5' exonuclease domain-containing protein.	DDT domain-containing protein.	0.404
JCGZ_01087	JCGZ_13065	A0A067L4A5	A0A067KE76	3'-5' exonuclease domain-containing protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.555
JCGZ_01087	JCGZ_13256	A0A067L4A5	A0A067K7X7	3'-5' exonuclease domain-containing protein.	DUF1767 domain-containing protein.	0.536
JCGZ_01087	JCGZ_14011	A0A067L4A5	A0A067K7L6	3'-5' exonuclease domain-containing protein.	Uncharacterized protein.	0.427
JCGZ_01087	JCGZ_19300	A0A067L4A5	A0A067JZR5	3'-5' exonuclease domain-containing protein.	DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family.	0.538
JCGZ_01087	JCGZ_22344	A0A067L4A5	A0A067L5Q9	3'-5' exonuclease domain-containing protein.	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.	0.563
JCGZ_01087	JCGZ_23314	A0A067L4A5	A0A067JHQ7	3'-5' exonuclease domain-containing protein.	Uncharacterized protein.	0.404
JCGZ_01566	JCGZ_21871	A0A067L9C8	A0A067JN03	Histone H2B; Belongs to the histone H2B family.	Protein kinase domain-containing protein.	0.416
JCGZ_02538	JCGZ_04990	R4NEX4	A0A067KV41	NAC transcription factor 075.	Uncharacterized protein.	0.407
JCGZ_02538	JCGZ_06976	R4NEX4	A0A067KM90	NAC transcription factor 075.	Toprim domain-containing protein.	0.493