46 items (Jatropha curcas) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	JCGZ_23334	CYCLIN domain-containing protein; Belongs to the cyclin family. (350 aa)
	JCGZ_21942	Helicase ATP-binding domain-containing protein. (235 aa)
	JCGZ_21423	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (450 aa)
	JCGZ_02736	Uncharacterized protein. (201 aa)
	JCGZ_06801	RPOLA_N domain-containing protein. (1526 aa)
	JCGZ_12081	Uncharacterized protein. (296 aa)
	JCGZ_13184	Uncharacterized protein. (599 aa)
	JCGZ_08237	Uncharacterized protein. (229 aa)
	JCGZ_09030	Histone H2B; Belongs to the histone H2B family. (139 aa)
	JCGZ_09049	SANTA domain-containing protein. (588 aa)
	JCGZ_05422	Histone H2B; Belongs to the histone H2B family. (143 aa)
	JCGZ_24513	Uncharacterized protein. (227 aa)
	JCGZ_16325	Uncharacterized protein. (80 aa)
	JCGZ_05749	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family. (138 aa)
	JCGZ_05743	Uncharacterized protein. (109 aa)
	JCGZ_10967	Phorbol-ester/DAG-type domain-containing protein. (568 aa)
	JCGZ_23792	SANTA domain-containing protein. (331 aa)
	JCGZ_26773	Uncharacterized protein. (628 aa)
	JCGZ_05745	Uncharacterized protein. (146 aa)
	JCGZ_09660	Uncharacterized protein. (189 aa)
	JCGZ_20928	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family. (146 aa)
	JCGZ_05673	Histone H2B; Belongs to the histone H2B family. (152 aa)
	JCGZ_05434	Uncharacterized protein. (87 aa)
	JCGZ_05414	Histone domain-containing protein; Belongs to the histone H2B family. (259 aa)
	JCGZ_23778	Uncharacterized protein. (191 aa)
	JCGZ_05562	C2H2-type domain-containing protein. (208 aa)
	JCGZ_04068	MAT1 domain-containing protein. (180 aa)
	JCGZ_01566	Histone H2B; Belongs to the histone H2B family. (138 aa)
	JCGZ_24735	Uncharacterized protein. (458 aa)
	JCGZ_01090	Uncharacterized protein. (544 aa)
	JCGZ_24555	Uncharacterized protein. (662 aa)
	JCGZ_01055	RPOLD domain-containing protein. (376 aa)
	JCGZ_17133	Histone domain-containing protein; Belongs to the histone H2B family. (112 aa)
	JCGZ_07277	Uncharacterized protein. (206 aa)
	JCGZ_18860	Uncharacterized protein. (190 aa)
	JCGZ_13730	Uncharacterized protein. (206 aa)
	JCGZ_22486	Uncharacterized protein. (238 aa)
	JCGZ_03407	WAT1-related protein. (350 aa)
	JCGZ_21088	Uncharacterized protein. (256 aa)
	JCGZ_20740	Uncharacterized protein. (70 aa)
	JCGZ_26150	Uncharacterized protein. (149 aa)
	JCGZ_20563	Uncharacterized protein. (771 aa)
	JCGZ_05295	Helicase ATP-binding domain-containing protein. (758 aa)
	JCGZ_18225	Uncharacterized protein. (191 aa)
	JCGZ_15155	Uncharacterized protein. (524 aa)
	JCGZ_05667	Histone H2B; Belongs to the histone H2B family. (147 aa)

Your Current Organism:

Jatropha curcas

NCBI taxonomy Id: 180498
Other names: J. curcas, Jatropha curcas L.

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
JCGZ_01055	JCGZ_01090	A0A067KWG0	A0A067KWI7	RPOLD domain-containing protein.	Uncharacterized protein.	0.906
JCGZ_01055	JCGZ_01566	A0A067KWG0	A0A067L9C8	RPOLD domain-containing protein.	Histone H2B; Belongs to the histone H2B family.	0.680
JCGZ_01055	JCGZ_02736	A0A067KWG0	A0A067KU57	RPOLD domain-containing protein.	Uncharacterized protein.	0.920
JCGZ_01055	JCGZ_03407	A0A067KWG0	A0A067KUJ1	RPOLD domain-containing protein.	WAT1-related protein.	0.568
JCGZ_01055	JCGZ_04068	A0A067KWG0	A0A067L2M4	RPOLD domain-containing protein.	MAT1 domain-containing protein.	0.925
JCGZ_01055	JCGZ_05295	A0A067KWG0	A0A067JKA4	RPOLD domain-containing protein.	Helicase ATP-binding domain-containing protein.	0.871
JCGZ_01055	JCGZ_05414	A0A067KWG0	A0A067L694	RPOLD domain-containing protein.	Histone domain-containing protein; Belongs to the histone H2B family.	0.680
JCGZ_01055	JCGZ_05422	A0A067KWG0	A0A067LH84	RPOLD domain-containing protein.	Histone H2B; Belongs to the histone H2B family.	0.680
JCGZ_01055	JCGZ_05434	A0A067KWG0	A0A067L6B2	RPOLD domain-containing protein.	Uncharacterized protein.	0.920
JCGZ_01055	JCGZ_05562	A0A067KWG0	A0A067LHM1	RPOLD domain-containing protein.	C2H2-type domain-containing protein.	0.966
JCGZ_01055	JCGZ_05667	A0A067KWG0	A0A067LHZ5	RPOLD domain-containing protein.	Histone H2B; Belongs to the histone H2B family.	0.680
JCGZ_01055	JCGZ_05673	A0A067KWG0	A0A067L707	RPOLD domain-containing protein.	Histone H2B; Belongs to the histone H2B family.	0.680
JCGZ_01055	JCGZ_05743	A0A067KWG0	A0A067L757	RPOLD domain-containing protein.	Uncharacterized protein.	0.969
JCGZ_01055	JCGZ_05745	A0A067KWG0	A0A067LAQ0	RPOLD domain-containing protein.	Uncharacterized protein.	0.969
JCGZ_01055	JCGZ_05749	A0A067KWG0	A0A067L7B6	RPOLD domain-containing protein.	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	0.969
JCGZ_01055	JCGZ_06801	A0A067KWG0	A0A067KMK3	RPOLD domain-containing protein.	RPOLA_N domain-containing protein.	0.987
JCGZ_01055	JCGZ_07277	A0A067KWG0	A0A067KBZ2	RPOLD domain-containing protein.	Uncharacterized protein.	0.978
JCGZ_01055	JCGZ_08237	A0A067KWG0	A0A067KL18	RPOLD domain-containing protein.	Uncharacterized protein.	0.999
JCGZ_01055	JCGZ_09030	A0A067KWG0	A0A067KHI4	RPOLD domain-containing protein.	Histone H2B; Belongs to the histone H2B family.	0.680
JCGZ_01055	JCGZ_09049	A0A067KWG0	A0A067KH99	RPOLD domain-containing protein.	SANTA domain-containing protein.	0.929