26 items (Jatropha curcas) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	JCGZ_25640	S-adenosylmethionine decarboxylase proenzyme. (359 aa)
	JCGZ_05869	Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family. (493 aa)
	JCGZ_22200	Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family. (552 aa)
	JCGZ_19861	Uncharacterized protein. (199 aa)
	JCGZ_14253	Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family. (478 aa)
	JCGZ_16521	Phenylalanine ammonia-lyase. (713 aa)
	JCGZ_18263	Uncharacterized protein. (1056 aa)
	JCGZ_18279	Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family. (455 aa)
	JCGZ_18299	Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family. (484 aa)
	JCGZ_11828	S-adenosylmethionine decarboxylase proenzyme. (358 aa)
	JCGZ_19015	Uncharacterized protein. (160 aa)
	JCGZ_12038	Uncharacterized protein. (157 aa)
	JCGZ_13047	Uncharacterized protein. (195 aa)
	JCGZ_14741	Uncharacterized protein. (957 aa)
	PAL4	Phenylalanine ammonia-lyase. (703 aa)
	JCGZ_21863	Uncharacterized protein. (229 aa)
	JCGZ_11455	Uncharacterized protein. (417 aa)
	JCGZ_11640	Uncharacterized protein. (200 aa)
	JCGZ_09795	Uncharacterized protein. (965 aa)
	JCGZ_04089	S-adenosylmethionine decarboxylase proenzyme. (363 aa)
	JCGZ_02065	S-adenosylmethionine decarboxylase proenzyme. (341 aa)
	JCGZ_15620	Uncharacterized protein. (161 aa)
	JCGZ_01462	Uncharacterized protein; Belongs to the actin family. (377 aa)
	JCGZ_14905	Uncharacterized protein; Belongs to the calmodulin family. (181 aa)
	JCGZ_20064	Phenylalanine ammonia-lyase. (712 aa)
	JCGZ_25544	Uncharacterized protein. (377 aa)

Your Current Organism:

Jatropha curcas

NCBI taxonomy Id: 180498
Other names: J. curcas, Jatropha curcas L.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
JCGZ_01462	JCGZ_11640	A0A067L969	A0A067KHH5	Uncharacterized protein; Belongs to the actin family.	Uncharacterized protein.	0.460
JCGZ_01462	JCGZ_14905	A0A067L969	A0A067LFG9	Uncharacterized protein; Belongs to the actin family.	Uncharacterized protein; Belongs to the calmodulin family.	0.458
JCGZ_01462	JCGZ_15620	A0A067L969	A0A067L211	Uncharacterized protein; Belongs to the actin family.	Uncharacterized protein.	0.460
JCGZ_01462	JCGZ_19015	A0A067L969	A0A067K6N7	Uncharacterized protein; Belongs to the actin family.	Uncharacterized protein.	0.631
JCGZ_01462	JCGZ_21863	A0A067L969	A0A067JC54	Uncharacterized protein; Belongs to the actin family.	Uncharacterized protein.	0.638
JCGZ_02065	JCGZ_05869	A0A067KV87	A0A067JJE4	S-adenosylmethionine decarboxylase proenzyme.	Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.	0.641
JCGZ_02065	JCGZ_09795	A0A067KV87	A0A067KMT6	S-adenosylmethionine decarboxylase proenzyme.	Uncharacterized protein.	0.502
JCGZ_02065	JCGZ_14253	A0A067KV87	A0A067JX70	S-adenosylmethionine decarboxylase proenzyme.	Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.	0.638
JCGZ_02065	JCGZ_14741	A0A067KV87	A0A067KBY1	S-adenosylmethionine decarboxylase proenzyme.	Uncharacterized protein.	0.502
JCGZ_02065	JCGZ_18263	A0A067KV87	A0A067JZN9	S-adenosylmethionine decarboxylase proenzyme.	Uncharacterized protein.	0.507
JCGZ_02065	JCGZ_18279	A0A067KV87	A0A067K2U7	S-adenosylmethionine decarboxylase proenzyme.	Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.	0.734
JCGZ_02065	JCGZ_18299	A0A067KV87	A0A067K2W2	S-adenosylmethionine decarboxylase proenzyme.	Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.	0.641
JCGZ_02065	JCGZ_22200	A0A067KV87	A0A067JSN0	S-adenosylmethionine decarboxylase proenzyme.	Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.	0.757
JCGZ_04089	JCGZ_05869	A0A067KRC8	A0A067JJE4	S-adenosylmethionine decarboxylase proenzyme.	Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.	0.647
JCGZ_04089	JCGZ_09795	A0A067KRC8	A0A067KMT6	S-adenosylmethionine decarboxylase proenzyme.	Uncharacterized protein.	0.509
JCGZ_04089	JCGZ_14253	A0A067KRC8	A0A067JX70	S-adenosylmethionine decarboxylase proenzyme.	Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.	0.641
JCGZ_04089	JCGZ_14741	A0A067KRC8	A0A067KBY1	S-adenosylmethionine decarboxylase proenzyme.	Uncharacterized protein.	0.509
JCGZ_04089	JCGZ_18263	A0A067KRC8	A0A067JZN9	S-adenosylmethionine decarboxylase proenzyme.	Uncharacterized protein.	0.502
JCGZ_04089	JCGZ_18279	A0A067KRC8	A0A067K2U7	S-adenosylmethionine decarboxylase proenzyme.	Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.	0.647
JCGZ_04089	JCGZ_18299	A0A067KRC8	A0A067K2W2	S-adenosylmethionine decarboxylase proenzyme.	Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.	0.647