56 items (Jatropha curcas) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	JCGZ_14358	Pectate_lyase_3 domain-containing protein; Belongs to the glycosyl hydrolase 28 family. (479 aa)
	JCGZ_00025	Uncharacterized protein. (224 aa)
	JCGZ_26058	Uncharacterized protein. (477 aa)
	JCGZ_01182	Uncharacterized protein. (364 aa)
	JCGZ_23184	Uncharacterized protein. (470 aa)
	JCGZ_26059	Uncharacterized protein; Belongs to the glycosyl hydrolase 28 family. (470 aa)
	JCGZ_20548	Uncharacterized protein; Belongs to the glycosyl hydrolase 28 family. (480 aa)
	JCGZ_21074	Uncharacterized protein. (385 aa)
	JCGZ_17575	Pectate lyase. (442 aa)
	JCGZ_17764	Uncharacterized protein; Belongs to the glycosyl hydrolase 28 family. (292 aa)
	JCGZ_26060	Uncharacterized protein; Belongs to the glycosyl hydrolase 28 family. (467 aa)
	JCGZ_17785	Uncharacterized protein; Belongs to the glycosyl hydrolase 28 family. (412 aa)
	JCGZ_21001	Uncharacterized protein. (421 aa)
	JCGZ_18921	Uncharacterized protein. (411 aa)
	JCGZ_24417	Uncharacterized protein. (421 aa)
	JCGZ_19407	Uncharacterized protein. (398 aa)
	JCGZ_19274	Uncharacterized protein. (389 aa)
	JCGZ_19279	Uncharacterized protein. (348 aa)
	JCGZ_19275	Uncharacterized protein. (375 aa)
	JCGZ_20465	Uncharacterized protein. (448 aa)
	JCGZ_18189	Pectate_lyase_3 domain-containing protein. (491 aa)
	JCGZ_16572	Pectate lyase. (481 aa)
	JCGZ_17763	Uncharacterized protein. (517 aa)
	JCGZ_19276	Uncharacterized protein. (338 aa)
	JCGZ_18934	Pectate_lyase_3 domain-containing protein; Belongs to the glycosyl hydrolase 28 family. (453 aa)
	JCGZ_14081	Uncharacterized protein. (567 aa)
	JCGZ_14116	Uncharacterized protein. (466 aa)
	JCGZ_19059	Uncharacterized protein. (485 aa)
	JCGZ_13965	Protein kinase domain-containing protein. (876 aa)
	JCGZ_13538	Uncharacterized protein. (393 aa)
	JCGZ_13539	Uncharacterized protein. (361 aa)
	JCGZ_19278	Uncharacterized protein. (390 aa)
	JCGZ_19280	Uncharacterized protein. (373 aa)
	JCGZ_19277	Uncharacterized protein. (391 aa)
	JCGZ_19282	Uncharacterized protein. (393 aa)
	JCGZ_16174	Pectate lyase. (491 aa)
	JCGZ_11370	Pectate lyase. (411 aa)
	JCGZ_06167	Uncharacterized protein; Belongs to the glycosyl hydrolase 28 family. (445 aa)
	JCGZ_13537	Uncharacterized protein. (392 aa)
	JCGZ_13541	Uncharacterized protein. (395 aa)
	JCGZ_06154	Uncharacterized protein; Belongs to the glycosyl hydrolase 28 family. (540 aa)
	JCGZ_07510	Uncharacterized protein. (492 aa)
	JCGZ_10580	Uncharacterized protein; Belongs to the glycosyl hydrolase 28 family. (327 aa)
	JCGZ_01029	Pectate lyase. (416 aa)
	JCGZ_10497	Uncharacterized protein. (393 aa)
	JCGZ_03487	Uncharacterized protein. (392 aa)
	JCGZ_03483	Uncharacterized protein. (391 aa)
	JCGZ_06814	Uncharacterized protein; Belongs to the glycosyl hydrolase 28 family. (467 aa)
	JCGZ_24341	Uncharacterized protein. (477 aa)
	JCGZ_16769	Uncharacterized protein. (422 aa)
	JCGZ_03485	Uncharacterized protein. (389 aa)
	JCGZ_09725	Pectate lyase. (462 aa)
	JCGZ_06617	Pectate lyase. (332 aa)
	JCGZ_10207	Pectate lyase. (403 aa)
	JCGZ_09664	Uncharacterized protein. (424 aa)
	JCGZ_10274	Uncharacterized protein. (442 aa)

Your Current Organism:

Jatropha curcas

NCBI taxonomy Id: 180498
Other names: J. curcas, Jatropha curcas L.

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
JCGZ_00025	JCGZ_06814	A0A067J8U1	A0A067KYL7	Uncharacterized protein.	Uncharacterized protein; Belongs to the glycosyl hydrolase 28 family.	0.403
JCGZ_01029	JCGZ_03483	A0A067KT29	A0A067KUX2	Pectate lyase.	Uncharacterized protein.	0.650
JCGZ_01029	JCGZ_03485	A0A067KT29	A0A067L770	Pectate lyase.	Uncharacterized protein.	0.650
JCGZ_01029	JCGZ_03487	A0A067KT29	A0A067KUR4	Pectate lyase.	Uncharacterized protein.	0.650
JCGZ_01029	JCGZ_06154	A0A067KT29	A0A067KQ15	Pectate lyase.	Uncharacterized protein; Belongs to the glycosyl hydrolase 28 family.	0.650
JCGZ_01029	JCGZ_10274	A0A067KT29	A0A067LPI1	Pectate lyase.	Uncharacterized protein.	0.650
JCGZ_01029	JCGZ_10497	A0A067KT29	A0A067KU09	Pectate lyase.	Uncharacterized protein.	0.650
JCGZ_01029	JCGZ_13537	A0A067KT29	A0A067KLK9	Pectate lyase.	Uncharacterized protein.	0.650
JCGZ_01029	JCGZ_13538	A0A067KT29	A0A067KA84	Pectate lyase.	Uncharacterized protein.	0.650
JCGZ_01029	JCGZ_13539	A0A067KT29	A0A067KAH0	Pectate lyase.	Uncharacterized protein.	0.650
JCGZ_01029	JCGZ_16769	A0A067KT29	A0A067L4X9	Pectate lyase.	Uncharacterized protein.	0.650
JCGZ_01029	JCGZ_19274	A0A067KT29	A0A067K008	Pectate lyase.	Uncharacterized protein.	0.650
JCGZ_01029	JCGZ_19275	A0A067KT29	A0A067K096	Pectate lyase.	Uncharacterized protein.	0.650
JCGZ_01029	JCGZ_19276	A0A067KT29	A0A067K3B4	Pectate lyase.	Uncharacterized protein.	0.650
JCGZ_01029	JCGZ_19277	A0A067KT29	A0A067KCJ3	Pectate lyase.	Uncharacterized protein.	0.650
JCGZ_01029	JCGZ_19278	A0A067KT29	A0A067KBD3	Pectate lyase.	Uncharacterized protein.	0.650
JCGZ_01029	JCGZ_19280	A0A067KT29	A0A067KBD7	Pectate lyase.	Uncharacterized protein.	0.650
JCGZ_01029	JCGZ_19282	A0A067KT29	A0A067KCJ8	Pectate lyase.	Uncharacterized protein.	0.650
JCGZ_01029	JCGZ_19407	A0A067KT29	A0A067JZL5	Pectate lyase.	Uncharacterized protein.	0.650
JCGZ_01182	JCGZ_06814	A0A067JGU9	A0A067KYL7	Uncharacterized protein.	Uncharacterized protein; Belongs to the glycosyl hydrolase 28 family.	0.462