10 items (Jatropha curcas) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	JCGZ_25075	NGN domain-containing protein. (334 aa)
	JCGZ_21895	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family. (159 aa)
	JCGZ_02471	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family. (135 aa)
	JCGZ_22797	Kin17_mid domain-containing protein. (400 aa)
	JCGZ_16213	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (263 aa)
	JCGZ_12534	KOW domain-containing protein. (146 aa)
	JCGZ_16173	Uncharacterized protein. (1790 aa)
	JCGZ_00789	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family. (193 aa)
	JCGZ_17463	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (264 aa)
	JCGZ_25243	Transcription elongation factor SPT5. (1046 aa)

Your Current Organism:

Jatropha curcas

NCBI taxonomy Id: 180498
Other names: J. curcas, Jatropha curcas L.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
JCGZ_00789	JCGZ_02471	A0A067KSB8	A0A067JR88	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family.	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family.	0.911
JCGZ_00789	JCGZ_16213	A0A067KSB8	A0A067K6J4	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family.	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	0.868
JCGZ_00789	JCGZ_17463	A0A067KSB8	A0A067L9J7	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family.	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	0.868
JCGZ_00789	JCGZ_21895	A0A067KSB8	A0A067JPF7	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family.	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family.	0.909
JCGZ_02471	JCGZ_00789	A0A067JR88	A0A067KSB8	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family.	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family.	0.911
JCGZ_02471	JCGZ_12534	A0A067JR88	A0A067KAN0	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family.	KOW domain-containing protein.	0.998
JCGZ_02471	JCGZ_16213	A0A067JR88	A0A067K6J4	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family.	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	0.865
JCGZ_02471	JCGZ_17463	A0A067JR88	A0A067L9J7	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family.	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	0.865
JCGZ_12534	JCGZ_02471	A0A067KAN0	A0A067JR88	KOW domain-containing protein.	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family.	0.998
JCGZ_12534	JCGZ_16213	A0A067KAN0	A0A067K6J4	KOW domain-containing protein.	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	0.938
JCGZ_12534	JCGZ_17463	A0A067KAN0	A0A067L9J7	KOW domain-containing protein.	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	0.938
JCGZ_16213	JCGZ_00789	A0A067K6J4	A0A067KSB8	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family.	0.868
JCGZ_16213	JCGZ_02471	A0A067K6J4	A0A067JR88	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family.	0.865
JCGZ_16213	JCGZ_12534	A0A067K6J4	A0A067KAN0	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	KOW domain-containing protein.	0.938
JCGZ_16213	JCGZ_17463	A0A067K6J4	A0A067L9J7	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	0.900
JCGZ_17463	JCGZ_00789	A0A067L9J7	A0A067KSB8	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family.	0.868
JCGZ_17463	JCGZ_02471	A0A067L9J7	A0A067JR88	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family.	0.865
JCGZ_17463	JCGZ_12534	A0A067L9J7	A0A067KAN0	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	KOW domain-containing protein.	0.938
JCGZ_17463	JCGZ_16213	A0A067L9J7	A0A067K6J4	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	0.900
JCGZ_21895	JCGZ_00789	A0A067JPF7	A0A067KSB8	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family.	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family.	0.909