27 items (Acinetobacter sp. SFD) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	OAL83919.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0145 family. (118 aa)
	OAL83533.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (93 aa)
	OAL83198.1	Nitrate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa)
	OAL82447.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (383 aa)
	OAL82487.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (394 aa)
	OAL82500.1	RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (483 aa)
	OAL86662.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0758 family. (233 aa)
	rpoA	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (335 aa)
	OAL86390.1	Peptidase M16; Derived by automated computational analysis using gene prediction method: Protein Homology. (524 aa)
	OAL85820.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (126 aa)
	OAL85822.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (93 aa)
	OAL85828.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (823 aa)
	rpoZ	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. (93 aa)
	OAL86975.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (343 aa)
	rpoC	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1396 aa)
	rpoB	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1362 aa)
	OAL84979.1	Helix-turn-helix transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (384 aa)
	nadE	NAD synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. (541 aa)
	OAL85067.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (225 aa)
	rpoH	RNA polymerase factor sigma-32; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes. (289 aa)
	OAL84333.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (323 aa)
	OAL84417.1	Deoxyguanosinetriphosphate triphosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the dGTPase family. Type 2 subfamily. (446 aa)
	OAL83777.1	Deoxyguanosinetriphosphate triphosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (446 aa)
	OAL83790.1	RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (204 aa)
	OAL83792.1	Restriction endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (136 aa)
	dnaG	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Belongs to the DnaG primase family. (640 aa)
	rpoD	RNA polymerase subunit sigma; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (627 aa)

Your Current Organism:

Acinetobacter sp. SFD

NCBI taxonomy Id: 1805635
Other names: A. sp. SFD

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OAL82500.1	rpoA	AY605_12875	AY605_00230	RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.956
OAL82500.1	rpoB	AY605_12875	AY605_02945	RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.949
OAL82500.1	rpoC	AY605_12875	AY605_02940	RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.955
OAL82500.1	rpoD	AY605_12875	AY605_09125	RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	RNA polymerase subunit sigma; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.507
OAL82500.1	rpoH	AY605_12875	AY605_06245	RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	RNA polymerase factor sigma-32; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.	0.500
OAL82500.1	rpoZ	AY605_12875	AY605_00740	RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.944
OAL83533.1	OAL85820.1	AY605_10830	AY605_14580	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.628
OAL83790.1	OAL83792.1	AY605_08515	AY605_08525	RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	Restriction endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.894
OAL83790.1	rpoA	AY605_08515	AY605_00230	RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.675
OAL83790.1	rpoB	AY605_08515	AY605_02945	RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.816
OAL83790.1	rpoC	AY605_08515	AY605_02940	RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.868
OAL83790.1	rpoZ	AY605_08515	AY605_00740	RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.672
OAL83792.1	OAL83790.1	AY605_08525	AY605_08515	Restriction endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.894
OAL85820.1	OAL83533.1	AY605_14580	AY605_10830	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.628
OAL85820.1	OAL85822.1	AY605_14580	AY605_14590	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.856
OAL85822.1	OAL85820.1	AY605_14590	AY605_14580	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.856
OAL86975.1	rpoA	AY605_01100	AY605_00230	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.666
OAL86975.1	rpoB	AY605_01100	AY605_02945	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.816
OAL86975.1	rpoC	AY605_01100	AY605_02940	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.868
OAL86975.1	rpoZ	AY605_01100	AY605_00740	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.665