(12 nodes) Mixed, incl. Aerobic electron transport chain, and ABC transporter transmembrane region network (Halomonas sp. ALS9)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	OAL58775.1	Cytochrome D ubiquinol oxidase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology. (468 aa)
	OAL58776.1	Cytochrome d ubiquinol oxidase subunit II; Derived by automated computational analysis using gene prediction method: Protein Homology. (335 aa)
	OAL60857.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (195 aa)
	OAL60858.1	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (561 aa)
	OAL60859.1	Paraquat-inducible protein A; Derived by automated computational analysis using gene prediction method: Protein Homology. (457 aa)
	OAL60860.1	Calcium/sodium antiporter; YrbG; inner membrane protein involved in cell envelope integrity; putative sodium ion/calcium ion exchanger; in E. coli it is non essential for cell viability; member of the YRBG family of cation/Ca2+ exchangers; Derived by automated computational analysis using gene prediction method: Protein Homology. (325 aa)
	OAL60861.1	Cytochrome D ubiquinol oxidase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology. (471 aa)
	OAL60890.1	Cytochrome d ubiquinol oxidase subunit II; Derived by automated computational analysis using gene prediction method: Protein Homology. (333 aa)
	OAL60862.1	Thiol reductant ABC exporter subunit CydD; Derived by automated computational analysis using gene prediction method: Protein Homology. (557 aa)
	OAL60863.1	Thiol reductant ABC exporter subunit CydC; Derived by automated computational analysis using gene prediction method: Protein Homology. (568 aa)
	OAL60864.1	Adenosine deaminase; Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism. (330 aa)
	OAL60399.1	NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (432 aa)

Your Current Organism:

Halomonas sp. ALS9

NCBI taxonomy Id: 1805819
Other names: H. sp. ALS9

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OAL58775.1	OAL58776.1	A6R74_07775	A6R74_07780	Cytochrome D ubiquinol oxidase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome d ubiquinol oxidase subunit II; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
OAL58775.1	OAL60399.1	A6R74_07775	A6R74_19505	Cytochrome D ubiquinol oxidase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.646
OAL58775.1	OAL60862.1	A6R74_07775	A6R74_19340	Cytochrome D ubiquinol oxidase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thiol reductant ABC exporter subunit CydD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.898
OAL58775.1	OAL60863.1	A6R74_07775	A6R74_19345	Cytochrome D ubiquinol oxidase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thiol reductant ABC exporter subunit CydC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.784
OAL58775.1	OAL60890.1	A6R74_07775	A6R74_19335	Cytochrome D ubiquinol oxidase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome d ubiquinol oxidase subunit II; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
OAL58776.1	OAL58775.1	A6R74_07780	A6R74_07775	Cytochrome d ubiquinol oxidase subunit II; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome D ubiquinol oxidase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
OAL58776.1	OAL60399.1	A6R74_07780	A6R74_19505	Cytochrome d ubiquinol oxidase subunit II; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.656
OAL58776.1	OAL60861.1	A6R74_07780	A6R74_19330	Cytochrome d ubiquinol oxidase subunit II; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome D ubiquinol oxidase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
OAL58776.1	OAL60862.1	A6R74_07780	A6R74_19340	Cytochrome d ubiquinol oxidase subunit II; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thiol reductant ABC exporter subunit CydD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.911
OAL58776.1	OAL60863.1	A6R74_07780	A6R74_19345	Cytochrome d ubiquinol oxidase subunit II; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thiol reductant ABC exporter subunit CydC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.894
OAL60399.1	OAL58775.1	A6R74_19505	A6R74_07775	NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome D ubiquinol oxidase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.646
OAL60399.1	OAL58776.1	A6R74_19505	A6R74_07780	NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome d ubiquinol oxidase subunit II; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.656
OAL60399.1	OAL60861.1	A6R74_19505	A6R74_19330	NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome D ubiquinol oxidase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.640
OAL60399.1	OAL60890.1	A6R74_19505	A6R74_19335	NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome d ubiquinol oxidase subunit II; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.649
OAL60857.1	OAL60858.1	A6R74_19310	A6R74_19315	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.929
OAL60857.1	OAL60859.1	A6R74_19310	A6R74_19320	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Paraquat-inducible protein A; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.921
OAL60857.1	OAL60860.1	A6R74_19310	A6R74_19325	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Calcium/sodium antiporter; YrbG; inner membrane protein involved in cell envelope integrity; putative sodium ion/calcium ion exchanger; in E. coli it is non essential for cell viability; member of the YRBG family of cation/Ca2+ exchangers; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.576
OAL60857.1	OAL60861.1	A6R74_19310	A6R74_19330	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome D ubiquinol oxidase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.518
OAL60857.1	OAL60862.1	A6R74_19310	A6R74_19340	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thiol reductant ABC exporter subunit CydD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.514
OAL60857.1	OAL60863.1	A6R74_19310	A6R74_19345	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thiol reductant ABC exporter subunit CydC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.523