(16 nodes) Signal transduction histidine kinase, dimerisation/phosphoacceptor domain, and Cyclase activity network (Sphingorhabdus sp. M41)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AMO70853.1	Histidine phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (137 aa)
	AMO71135.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (770 aa)
	AMO71146.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (392 aa)
	AMO73234.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (193 aa)
	AMO73240.1	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (795 aa)
	AMO71459.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (829 aa)
	AMO71744.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (473 aa)
	AMO71776.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (774 aa)
	AMO72147.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (326 aa)
	AMO72162.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (597 aa)
	AMO72163.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (780 aa)
	AMO72214.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1069 aa)
	AMO72233.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (416 aa)
	AMO72540.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (838 aa)
	AMO72854.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (587 aa)
	AMO72930.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (165 aa)

Your Current Organism:

Sphingorhabdus sp. M41

NCBI taxonomy Id: 1806885
Other names: S. sp. M41

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMO70853.1	AMO71135.1	AZE99_02360	AZE99_04050	Histidine phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.998
AMO70853.1	AMO71146.1	AZE99_02360	AZE99_04135	Histidine phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.957
AMO70853.1	AMO71459.1	AZE99_02360	AZE99_05965	Histidine phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.982
AMO70853.1	AMO71744.1	AZE99_02360	AZE99_07670	Histidine phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.982
AMO70853.1	AMO71776.1	AZE99_02360	AZE99_07835	Histidine phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.948
AMO70853.1	AMO72147.1	AZE99_02360	AZE99_10065	Histidine phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.766
AMO70853.1	AMO72162.1	AZE99_02360	AZE99_10140	Histidine phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.998
AMO70853.1	AMO72163.1	AZE99_02360	AZE99_10145	Histidine phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.998
AMO70853.1	AMO72214.1	AZE99_02360	AZE99_10445	Histidine phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.981
AMO70853.1	AMO72233.1	AZE99_02360	AZE99_10555	Histidine phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.985
AMO70853.1	AMO72540.1	AZE99_02360	AZE99_12375	Histidine phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.981
AMO70853.1	AMO72854.1	AZE99_02360	AZE99_14235	Histidine phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.985
AMO70853.1	AMO72930.1	AZE99_02360	AZE99_14685	Histidine phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.992
AMO70853.1	AMO73234.1	AZE99_02360	AZE99_05075	Histidine phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.981
AMO70853.1	AMO73240.1	AZE99_02360	AZE99_05220	Histidine phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.979
AMO71135.1	AMO70853.1	AZE99_04050	AZE99_02360	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Histidine phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
AMO71135.1	AMO71146.1	AZE99_04050	AZE99_04135	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.995
AMO71135.1	AMO71459.1	AZE99_04050	AZE99_05965	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.989
AMO71135.1	AMO71744.1	AZE99_04050	AZE99_07670	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.984
AMO71135.1	AMO71776.1	AZE99_04050	AZE99_07835	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.993