(35 nodes) ClpP/crotonase-like domain superfamily network (Sphingorhabdus sp. M41)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AMO70548.1	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (255 aa)
	AMO70583.1	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (266 aa)
	AMO73151.1	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (266 aa)
	AMO70656.1	Signal peptide peptidase SppA; Derived by automated computational analysis using gene prediction method: Protein Homology. (629 aa)
	AMO73174.1	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (247 aa)
	AMO70879.1	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (264 aa)
	AMO70935.1	methylmalonyl-CoA carboxyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (507 aa)
	AMO70986.1	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family. (678 aa)
	AMO71263.1	P-hydroxycinnamoyl CoA hydratase/lyase; Catalyzes the conversion of feruloyl-CoA to vanillin and acetyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology. (280 aa)
	AMO71310.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (256 aa)
	accD	acetyl-CoA carboxyl transferase; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family. (284 aa)
	AMO71458.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (317 aa)
	AMO73296.1	ATP-dependent Clp protease proteolytic subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (178 aa)
	clpP	ATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. (207 aa)
	AMO71750.1	methylmalonyl-CoA carboxyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (508 aa)
	AMO71754.1	enoyl-CoA hydratase; Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology. (260 aa)
	AMO71926.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (437 aa)
	AMO71996.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (238 aa)
	AMO73352.1	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (256 aa)
	AMO72049.1	Peptidase S41; Derived by automated computational analysis using gene prediction method: Protein Homology. (493 aa)
	accA	acetyl-CoA carboxylase carboxyl transferase subunit alpha; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA. (315 aa)
	AMO73380.1	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family. (260 aa)
	AMO72226.1	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (347 aa)
	AMO72266.1	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (283 aa)
	AMO72511.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (228 aa)
	AMO72524.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (223 aa)
	AMO72534.1	enoyl-CoA hydratase; Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family. (274 aa)
	AMO72904.1	enoyl-CoA hydratase; Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology. (290 aa)
	AMO72912.1	enoyl-CoA hydratase; Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family. (265 aa)
	AMO72920.1	enoyl-CoA hydratase; Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family. (252 aa)
	AMO72979.1	Peptidase S41; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S41A family. (454 aa)
	AMO72985.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (243 aa)
	AMO73118.1	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (729 aa)
	AMO73120.1	acetyl-CoA carboxylase carboxyltransferase subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (540 aa)
	AMO73515.1	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (270 aa)

Your Current Organism:

Sphingorhabdus sp. M41

NCBI taxonomy Id: 1806885
Other names: S. sp. M41

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMO70548.1	AMO70879.1	AZE99_00600	AZE99_02530	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.470
AMO70548.1	AMO71263.1	AZE99_00600	AZE99_04770	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	P-hydroxycinnamoyl CoA hydratase/lyase; Catalyzes the conversion of feruloyl-CoA to vanillin and acetyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.457
AMO70548.1	AMO71310.1	AZE99_00600	AZE99_05040	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.750
AMO70548.1	AMO71458.1	AZE99_00600	AZE99_05960	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.407
AMO70548.1	AMO71754.1	AZE99_00600	AZE99_07720	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.450
AMO70548.1	AMO72904.1	AZE99_00600	AZE99_14540	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.455
AMO70548.1	AMO72912.1	AZE99_00600	AZE99_14585	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	0.449
AMO70548.1	AMO73151.1	AZE99_00600	AZE99_00940	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.482
AMO70548.1	AMO73352.1	AZE99_00600	AZE99_09385	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.433
AMO70583.1	AMO70879.1	AZE99_00805	AZE99_02530	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.488
AMO70583.1	AMO71263.1	AZE99_00805	AZE99_04770	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	P-hydroxycinnamoyl CoA hydratase/lyase; Catalyzes the conversion of feruloyl-CoA to vanillin and acetyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.477
AMO70583.1	AMO71310.1	AZE99_00805	AZE99_05040	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.755
AMO70583.1	AMO71458.1	AZE99_00805	AZE99_05960	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.503
AMO70583.1	AMO71754.1	AZE99_00805	AZE99_07720	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.488
AMO70583.1	AMO72904.1	AZE99_00805	AZE99_14540	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.478
AMO70583.1	AMO72912.1	AZE99_00805	AZE99_14585	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	0.470
AMO70583.1	AMO73151.1	AZE99_00805	AZE99_00940	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.485
AMO70583.1	AMO73352.1	AZE99_00805	AZE99_09385	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.482
AMO70879.1	AMO70548.1	AZE99_02530	AZE99_00600	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.470
AMO70879.1	AMO70583.1	AZE99_02530	AZE99_00805	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.488