(21 nodes) Metal-dependent hydrolase network (Sphingorhabdus sp. M41)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AMO70491.1	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (568 aa)
	AMO73214.1	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1068 aa)
	AMO71210.1	2-pyrone-4,6-dicarboxylate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (295 aa)
	AMO71215.1	4-oxalomesaconate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (340 aa)
	AMO71240.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (378 aa)
	AMO73225.1	4-hydroxyphenyl-beta-ketoacyl-CoA hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (288 aa)
	AMO71258.1	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (351 aa)
	AMO71332.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (491 aa)
	AMO73238.1	Peptidase M19; Derived by automated computational analysis using gene prediction method: Protein Homology. (381 aa)
	AMO71385.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (347 aa)
	AMO71677.1	Dihydroorotase; Derived by automated computational analysis using gene prediction method: Protein Homology. (406 aa)
	AMO71808.1	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (258 aa)
	AMO73335.1	Metal-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (538 aa)
	AMO71934.1	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (431 aa)
	AMO71935.1	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (466 aa)
	AMO71993.1	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (580 aa)
	AMO72228.1	Membrane dipeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (411 aa)
	AMO72231.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (579 aa)
	AMO72578.1	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (574 aa)
	AMO72937.1	Xaa-Pro dipeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (426 aa)
	pyrC	Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate. (344 aa)

Your Current Organism:

Sphingorhabdus sp. M41

NCBI taxonomy Id: 1806885
Other names: S. sp. M41

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMO71210.1	AMO71215.1	AZE99_04470	AZE99_04495	2-pyrone-4,6-dicarboxylate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	4-oxalomesaconate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.931
AMO71210.1	AMO71240.1	AZE99_04470	AZE99_04625	2-pyrone-4,6-dicarboxylate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.838
AMO71215.1	AMO71210.1	AZE99_04495	AZE99_04470	4-oxalomesaconate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-pyrone-4,6-dicarboxylate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.931
AMO71240.1	AMO71210.1	AZE99_04625	AZE99_04470	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	2-pyrone-4,6-dicarboxylate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.838
AMO71332.1	AMO71934.1	AZE99_05175	AZE99_08815	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.526
AMO71332.1	AMO71935.1	AZE99_05175	AZE99_08820	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.533
AMO71332.1	AMO73238.1	AZE99_05175	AZE99_05180	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Peptidase M19; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.700
AMO71332.1	AMO73335.1	AZE99_05175	AZE99_08735	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Metal-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.589
AMO71677.1	pyrC	AZE99_07275	AZE99_15120	Dihydroorotase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate.	0.913
AMO71934.1	AMO71332.1	AZE99_08815	AZE99_05175	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.526
AMO71934.1	AMO71935.1	AZE99_08815	AZE99_08820	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.887
AMO71934.1	AMO72228.1	AZE99_08815	AZE99_10525	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane dipeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.402
AMO71934.1	AMO72937.1	AZE99_08815	AZE99_14730	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xaa-Pro dipeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.483
AMO71934.1	AMO73214.1	AZE99_08815	AZE99_04040	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.471
AMO71934.1	AMO73238.1	AZE99_08815	AZE99_05180	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase M19; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.417
AMO71935.1	AMO71332.1	AZE99_08820	AZE99_05175	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.533
AMO71935.1	AMO71934.1	AZE99_08820	AZE99_08815	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.887
AMO71935.1	AMO72937.1	AZE99_08820	AZE99_14730	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xaa-Pro dipeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.522
AMO72228.1	AMO71934.1	AZE99_10525	AZE99_08815	Membrane dipeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.402
AMO72937.1	AMO71934.1	AZE99_14730	AZE99_08815	Xaa-Pro dipeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.483