(5 nodes) Nucleobase-containing compound kinase activity network (Limnobacter sp. CACIAM66H1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	pyrH	UMP kinase; Catalyzes the reversible phosphorylation of UMP to UDP. (236 aa)
	cmk	Cytidylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (224 aa)
	gmk	Guanylate kinase; Essential for recycling GMP and indirectly, cGMP. (215 aa)
	KYP12099.1	Deoxyadenosine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (213 aa)
	ndk	Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. (141 aa)

Your Current Organism:

Limnobacter sp. CACIAM66H1

NCBI taxonomy Id: 1813033
Other names: L. sp. CACIAM 66H1, Limnobacter sp. CACIAM 66H1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KYP12099.1	cmk	A0129_03905	A0129_02640	Deoxyadenosine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytidylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.675
KYP12099.1	gmk	A0129_03905	A0129_02980	Deoxyadenosine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.	0.699
KYP12099.1	ndk	A0129_03905	A0129_10685	Deoxyadenosine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.	0.478
cmk	KYP12099.1	A0129_02640	A0129_03905	Cytidylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Deoxyadenosine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.675
cmk	gmk	A0129_02640	A0129_02980	Cytidylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.	0.625
cmk	ndk	A0129_02640	A0129_10685	Cytidylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.	0.778
cmk	pyrH	A0129_02640	A0129_01560	Cytidylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	UMP kinase; Catalyzes the reversible phosphorylation of UMP to UDP.	0.849
gmk	KYP12099.1	A0129_02980	A0129_03905	Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.	Deoxyadenosine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.699
gmk	cmk	A0129_02980	A0129_02640	Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.	Cytidylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.625
gmk	ndk	A0129_02980	A0129_10685	Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.	Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.	0.767
gmk	pyrH	A0129_02980	A0129_01560	Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.	UMP kinase; Catalyzes the reversible phosphorylation of UMP to UDP.	0.753
ndk	KYP12099.1	A0129_10685	A0129_03905	Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.	Deoxyadenosine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.478
ndk	cmk	A0129_10685	A0129_02640	Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.	Cytidylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.778
ndk	gmk	A0129_10685	A0129_02980	Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.	Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.	0.767
ndk	pyrH	A0129_10685	A0129_01560	Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.	UMP kinase; Catalyzes the reversible phosphorylation of UMP to UDP.	0.789
pyrH	cmk	A0129_01560	A0129_02640	UMP kinase; Catalyzes the reversible phosphorylation of UMP to UDP.	Cytidylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.849
pyrH	gmk	A0129_01560	A0129_02980	UMP kinase; Catalyzes the reversible phosphorylation of UMP to UDP.	Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.	0.753
pyrH	ndk	A0129_01560	A0129_10685	UMP kinase; Catalyzes the reversible phosphorylation of UMP to UDP.	Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.	0.789