(5 nodes) Elg1 RFC-like complex network (fungal sp. No14919)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1V1SQV2	Uncharacterized protein. (863 aa)
	A0A1V1SV79	AAA domain-containing protein. (359 aa)
	A0A1V1T2U0	AAA domain-containing protein. (388 aa)
	A0A1V1T374	AAA domain-containing protein. (352 aa)
	A0A1V1TQC4	AAA domain-containing protein. (385 aa)

Your Current Organism:

fungal sp. No14919

NCBI taxonomy Id: 1813822
Other names: f. sp. No.14919, fungal sp. No.14919

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1V1SQV2	A0A1V1SV79	Uncharacterized protein.	AAA domain-containing protein.	0.999
A0A1V1SQV2	A0A1V1T2U0	Uncharacterized protein.	AAA domain-containing protein.	0.999
A0A1V1SQV2	A0A1V1T374	Uncharacterized protein.	AAA domain-containing protein.	0.999
A0A1V1SQV2	A0A1V1TQC4	Uncharacterized protein.	AAA domain-containing protein.	0.999
A0A1V1SV79	A0A1V1SQV2	AAA domain-containing protein.	Uncharacterized protein.	0.999
A0A1V1SV79	A0A1V1T2U0	AAA domain-containing protein.	AAA domain-containing protein.	0.999
A0A1V1SV79	A0A1V1T374	AAA domain-containing protein.	AAA domain-containing protein.	0.999
A0A1V1SV79	A0A1V1TQC4	AAA domain-containing protein.	AAA domain-containing protein.	0.999
A0A1V1T2U0	A0A1V1SQV2	AAA domain-containing protein.	Uncharacterized protein.	0.999
A0A1V1T2U0	A0A1V1SV79	AAA domain-containing protein.	AAA domain-containing protein.	0.999
A0A1V1T2U0	A0A1V1T374	AAA domain-containing protein.	AAA domain-containing protein.	0.999
A0A1V1T2U0	A0A1V1TQC4	AAA domain-containing protein.	AAA domain-containing protein.	0.999
A0A1V1T374	A0A1V1SQV2	AAA domain-containing protein.	Uncharacterized protein.	0.999
A0A1V1T374	A0A1V1SV79	AAA domain-containing protein.	AAA domain-containing protein.	0.999
A0A1V1T374	A0A1V1T2U0	AAA domain-containing protein.	AAA domain-containing protein.	0.999
A0A1V1T374	A0A1V1TQC4	AAA domain-containing protein.	AAA domain-containing protein.	0.999
A0A1V1TQC4	A0A1V1SQV2	AAA domain-containing protein.	Uncharacterized protein.	0.999
A0A1V1TQC4	A0A1V1SV79	AAA domain-containing protein.	AAA domain-containing protein.	0.999
A0A1V1TQC4	A0A1V1T2U0	AAA domain-containing protein.	AAA domain-containing protein.	0.999
A0A1V1TQC4	A0A1V1T374	AAA domain-containing protein.	AAA domain-containing protein.	0.999