(37 nodes) Other glycan degradation network (fungal sp. No14919)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1V1T9W5	Uncharacterized protein. (68 aa)
	A0A1V1SS22	BetaGal_dom2 domain-containing protein. (990 aa)
	A0A1V1SSV8	Uncharacterized protein. (864 aa)
	A0A1V1SWC3	HET domain-containing protein. (767 aa)
	A0A1V1SYM4	Bgal_small_N domain-containing protein. (862 aa)
	A0A1V1T023	Uncharacterized protein. (363 aa)
	A0A1V1T060	Bgal_small_N domain-containing protein. (1066 aa)
	A0A1V1T0E0	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX. (329 aa)
	A0A1V1T0F1	Uncharacterized protein. (582 aa)
	A0A1V1T0U1	Uncharacterized protein. (878 aa)
	A0A1V1T157	HET domain-containing protein. (792 aa)
	A0A1V1T1X2	Glyco_hyd_65N_2 domain-containing protein. (816 aa)
	A0A1V1T4I6	Glyco_hyd_65N_2 domain-containing protein. (825 aa)
	A0A1V1T4K3	Uncharacterized protein. (856 aa)
	A0A1V1T4Y1	HET domain-containing protein. (747 aa)
	A0A1V1T746	HET domain-containing protein. (805 aa)
	A0A1V1T7C0	HET domain-containing protein. (649 aa)
	A0A1V1T7F0	HET domain-containing protein. (1052 aa)
	A0A1V1T8W8	Uncharacterized protein. (798 aa)
	A0A1V1TA90	Uncharacterized protein. (122 aa)
	A0A1V1TAE8	Uncharacterized protein. (483 aa)
	A0A1V1TC32	Glyco_hyd_65N_2 domain-containing protein. (800 aa)
	A0A1V1TCQ1	HET domain-containing protein. (690 aa)
	A0A1V1TGF2	Uncharacterized protein. (377 aa)
	A0A1V1TGP4	Beta-hexosaminidase. (583 aa)
	A0A1V1TGW2	RING-type domain-containing protein. (290 aa)
	A0A1V1TIF2	Glyco_hydro_30C domain-containing protein. (491 aa)
	A0A1V1TJE9	Beta-galactosidase. (663 aa)
	A0A1V1TMN2	Uncharacterized protein. (759 aa)
	A0A1V1TN55	Glyco_hydro_30 domain-containing protein; Belongs to the glycosyl hydrolase 30 family. (154 aa)
	A0A1V1TNC9	Glyco_hydro_30C domain-containing protein. (269 aa)
	A0A1V1TNK8	Beta-galactosidase. (1012 aa)
	A0A1V1TPY8	Alpha-mann_mid domain-containing protein. (1077 aa)
	A0A1V1TQ34	HET domain-containing protein. (707 aa)
	A0A1V1TQP1	Uncharacterized protein. (712 aa)
	A0A1V1TQU3	Uncharacterized protein. (893 aa)
	A0A1V1TS65	Uncharacterized protein. (873 aa)

Your Current Organism:

fungal sp. No14919

NCBI taxonomy Id: 1813822
Other names: f. sp. No.14919, fungal sp. No.14919

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1V1SS22	A0A1V1SSV8	BetaGal_dom2 domain-containing protein.	Uncharacterized protein.	0.533
A0A1V1SS22	A0A1V1T0U1	BetaGal_dom2 domain-containing protein.	Uncharacterized protein.	0.533
A0A1V1SS22	A0A1V1T4K3	BetaGal_dom2 domain-containing protein.	Uncharacterized protein.	0.533
A0A1V1SS22	A0A1V1T8W8	BetaGal_dom2 domain-containing protein.	Uncharacterized protein.	0.400
A0A1V1SS22	A0A1V1T9W5	BetaGal_dom2 domain-containing protein.	Uncharacterized protein.	0.599
A0A1V1SS22	A0A1V1TA90	BetaGal_dom2 domain-containing protein.	Uncharacterized protein.	0.599
A0A1V1SS22	A0A1V1TAE8	BetaGal_dom2 domain-containing protein.	Uncharacterized protein.	0.576
A0A1V1SS22	A0A1V1TGP4	BetaGal_dom2 domain-containing protein.	Beta-hexosaminidase.	0.671
A0A1V1SS22	A0A1V1TIF2	BetaGal_dom2 domain-containing protein.	Glyco_hydro_30C domain-containing protein.	0.599
A0A1V1SS22	A0A1V1TN55	BetaGal_dom2 domain-containing protein.	Glyco_hydro_30 domain-containing protein; Belongs to the glycosyl hydrolase 30 family.	0.599
A0A1V1SS22	A0A1V1TNC9	BetaGal_dom2 domain-containing protein.	Glyco_hydro_30C domain-containing protein.	0.599
A0A1V1SS22	A0A1V1TQU3	BetaGal_dom2 domain-containing protein.	Uncharacterized protein.	0.619
A0A1V1SS22	A0A1V1TS65	BetaGal_dom2 domain-containing protein.	Uncharacterized protein.	0.619
A0A1V1SSV8	A0A1V1SS22	Uncharacterized protein.	BetaGal_dom2 domain-containing protein.	0.533
A0A1V1SSV8	A0A1V1TJE9	Uncharacterized protein.	Beta-galactosidase.	0.533
A0A1V1SSV8	A0A1V1TNK8	Uncharacterized protein.	Beta-galactosidase.	0.533
A0A1V1SYM4	A0A1V1TQU3	Bgal_small_N domain-containing protein.	Uncharacterized protein.	0.653
A0A1V1SYM4	A0A1V1TS65	Bgal_small_N domain-containing protein.	Uncharacterized protein.	0.652
A0A1V1T060	A0A1V1TQU3	Bgal_small_N domain-containing protein.	Uncharacterized protein.	0.657
A0A1V1T060	A0A1V1TS65	Bgal_small_N domain-containing protein.	Uncharacterized protein.	0.655