(59 nodes) Basal transcription factors network (fungal sp. No14919)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1V1TNM6	DUF4211 domain-containing protein. (628 aa)
	A0A1V1TPC6	Uncharacterized protein. (400 aa)
	A0A1V1TPW7	HMG box domain-containing protein. (319 aa)
	A0A1V1TSN1	Amidohydro-rel domain-containing protein. (313 aa)
	A0A1V1TSP1	Uncharacterized protein. (341 aa)
	A0A1V1TT14	CYCLIN domain-containing protein; Belongs to the cyclin family. (358 aa)
	A0A1V1TTU0	ING domain-containing protein. (830 aa)
	A0A1V1TTU2	Uncharacterized protein. (1104 aa)
	A0A1V1SUH7	Uncharacterized protein. (516 aa)
	A0A1V1TJD2	Uncharacterized protein. (378 aa)
	A0A1V1SV06	Uncharacterized protein. (477 aa)
	A0A1V1SUJ9	PHD domain-containing protein. (805 aa)
	A0A1V1SVA5	TAFII28 domain-containing protein. (170 aa)
	A0A1V1SVN3	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (410 aa)
	A0A1V1SVS7	Uncharacterized protein. (426 aa)
	A0A1V1SW11	Uncharacterized protein. (622 aa)
	A0A1V1SW80	Uncharacterized protein. (331 aa)
	A0A1V1SXD0	Helicase ATP-binding domain-containing protein. (799 aa)
	A0A1V1SXS6	TFIID_20kDa domain-containing protein. (705 aa)
	A0A1V1SY25	Acyl_transf_3 domain-containing protein. (433 aa)
	A0A1V1SYQ5	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (502 aa)
	A0A1V1SZE7	Uncharacterized protein. (251 aa)
	A0A1V1T098	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (303 aa)
	A0A1V1T0N6	Chromatin modification-related protein. (459 aa)
	A0A1V1T0Y1	Uncharacterized protein. (349 aa)
	A0A1V1T148	Uncharacterized protein. (266 aa)
	A0A1V1T168	TAFII55_N domain-containing protein. (527 aa)
	A0A1V1T1R5	Zn(2)-C6 fungal-type domain-containing protein. (940 aa)
	A0A1V1T1R7	BSD domain-containing protein. (653 aa)
	A0A1V1T2C7	Uncharacterized protein. (165 aa)
	A0A1V1T2D1	Chromatin modification-related protein. (688 aa)
	A0A1V1T2L9	Uncharacterized protein. (286 aa)
	A0A1V1T3P0	Uncharacterized protein. (527 aa)
	A0A1V1T3Q6	Uncharacterized protein. (665 aa)
	A0A1V1T4L5	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (468 aa)
	A0A1V1T6I1	Uncharacterized protein. (314 aa)
	A0A1V1T753	TFIIB-type domain-containing protein. (372 aa)
	A0A1V1T7I4	HTH TFE/IIEalpha-type domain-containing protein. (412 aa)
	A0A1V1T8R8	Uncharacterized protein. (768 aa)
	A0A1V1TB57	Uncharacterized protein. (257 aa)
	A0A1V1TBN0	FAD-binding PCMH-type domain-containing protein. (471 aa)
	A0A1V1TBX3	RED_N domain-containing protein. (526 aa)
	A0A1V1TCW2	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (115 aa)
	A0A1V1TEG0	Uncharacterized protein. (825 aa)
	A0A1V1TEL7	TAF domain-containing protein. (475 aa)
	A0A1V1TGB1	Uncharacterized protein. (476 aa)
	A0A1V1TGR4	Uncharacterized protein. (529 aa)
	A0A1V1TID8	BRO1 domain-containing protein. (477 aa)
	A0A1V1TJ05	Uncharacterized protein. (680 aa)
	A0A1V1TJI4	Uncharacterized protein. (77 aa)
	A0A1V1TKD5	Uncharacterized protein. (1640 aa)
	A0A1V1TMP8	Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...] (185 aa)
	A0A1V1TNC2	Uncharacterized protein. (1770 aa)
	A0A1V1TNH3	Urb2 domain-containing protein. (1349 aa)
	A0A1V1STD3	DUF3591 domain-containing protein. (1161 aa)
	A0A1V1SS65	Uncharacterized protein. (291 aa)
	A0A1V1SRX1	RING-type domain-containing protein. (377 aa)
	A0A1V1SRC9	Epimerase domain-containing protein. (291 aa)
	A0A1V1SR20	Uncharacterized protein. (380 aa)

Your Current Organism:

fungal sp. No14919

NCBI taxonomy Id: 1813822
Other names: f. sp. No.14919, fungal sp. No.14919

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1V1SR20	A0A1V1SRX1	Uncharacterized protein.	RING-type domain-containing protein.	0.977
A0A1V1SR20	A0A1V1SS65	Uncharacterized protein.	Uncharacterized protein.	0.863
A0A1V1SR20	A0A1V1STD3	Uncharacterized protein.	DUF3591 domain-containing protein.	0.867
A0A1V1SR20	A0A1V1SUJ9	Uncharacterized protein.	PHD domain-containing protein.	0.981
A0A1V1SR20	A0A1V1SV06	Uncharacterized protein.	Uncharacterized protein.	0.954
A0A1V1SR20	A0A1V1SVA5	Uncharacterized protein.	TAFII28 domain-containing protein.	0.871
A0A1V1SR20	A0A1V1SVN3	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.861
A0A1V1SR20	A0A1V1SW80	Uncharacterized protein.	Uncharacterized protein.	0.864
A0A1V1SR20	A0A1V1SXD0	Uncharacterized protein.	Helicase ATP-binding domain-containing protein.	0.970
A0A1V1SR20	A0A1V1SXS6	Uncharacterized protein.	TFIID_20kDa domain-containing protein.	0.895
A0A1V1SR20	A0A1V1SY25	Uncharacterized protein.	Acyl_transf_3 domain-containing protein.	0.871
A0A1V1SR20	A0A1V1SYQ5	Uncharacterized protein.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.980
A0A1V1SR20	A0A1V1SZE7	Uncharacterized protein.	Uncharacterized protein.	0.986
A0A1V1SR20	A0A1V1T098	Uncharacterized protein.	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	0.991
A0A1V1SR20	A0A1V1T0N6	Uncharacterized protein.	Chromatin modification-related protein.	0.427
A0A1V1SR20	A0A1V1T0Y1	Uncharacterized protein.	Uncharacterized protein.	0.956
A0A1V1SR20	A0A1V1T168	Uncharacterized protein.	TAFII55_N domain-containing protein.	0.919
A0A1V1SR20	A0A1V1T1R7	Uncharacterized protein.	BSD domain-containing protein.	0.969
A0A1V1SR20	A0A1V1T2C7	Uncharacterized protein.	Uncharacterized protein.	0.857
A0A1V1SR20	A0A1V1T2D1	Uncharacterized protein.	Chromatin modification-related protein.	0.427