(64 nodes) Nucleotide excision repair network (fungal sp. No14919)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1V1TRB6	Uncharacterized protein. (438 aa)
	A0A1V1SQD2	Uncharacterized protein. (275 aa)
	A0A1V1SR71	Uncharacterized protein. (384 aa)
	A0A1V1SRV2	Uncharacterized protein. (1236 aa)
	A0A1V1SRX1	RING-type domain-containing protein. (377 aa)
	A0A1V1SV06	Uncharacterized protein. (477 aa)
	A0A1V1SV79	AAA domain-containing protein. (359 aa)
	A0A1V1SVD0	Uncharacterized protein. (506 aa)
	A0A1V1SVG2	Uncharacterized protein. (289 aa)
	A0A1V1SVN3	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (410 aa)
	A0A1V1SX50	Uncharacterized protein. (210 aa)
	A0A1V1SXC1	Replication factor C subunit 1. (1047 aa)
	A0A1V1SXD0	Helicase ATP-binding domain-containing protein. (799 aa)
	A0A1V1SXP5	DNA ligase. (903 aa)
	A0A1V1SXS2	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2275 aa)
	A0A1V1SYE3	Uncharacterized protein. (322 aa)
	A0A1V1SYQ5	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (502 aa)
	A0A1V1SZ69	Uncharacterized protein. (1001 aa)
	A0A1V1SZB8	Uncharacterized protein. (396 aa)
	A0A1V1T1R7	BSD domain-containing protein. (653 aa)
	A0A1V1T2M6	XPA_C domain-containing protein. (435 aa)
	A0A1V1T2U0	AAA domain-containing protein. (388 aa)
	A0A1V1T374	AAA domain-containing protein. (352 aa)
	A0A1V1T4E2	Amino_oxidase domain-containing protein. (513 aa)
	A0A1V1T4L5	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (468 aa)
	A0A1V1T4Q9	Uncharacterized protein. (193 aa)
	A0A1V1T4R7	XPGI domain-containing protein. (586 aa)
	A0A1V1T4U5	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (166 aa)
	A0A1V1T5X9	Integrase catalytic domain-containing protein. (1177 aa)
	A0A1V1T872	DNA polymerase. (1104 aa)
	A0A1V1T8B4	DNA_pol_E_B domain-containing protein. (808 aa)
	A0A1V1T8Y6	WD_REPEATS_REGION domain-containing protein. (512 aa)
	A0A1V1TD12	CBFD_NFYB_HMF domain-containing protein. (202 aa)
	A0A1V1TDY5	Uncharacterized protein. (112 aa)
	A0A1V1TEG0	Uncharacterized protein. (825 aa)
	A0A1V1TEN9	Uncharacterized protein. (956 aa)
	A0A1V1TG98	CPSF_A domain-containing protein. (1147 aa)
	A0A1V1TGB6	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (259 aa)
	A0A1V1TGC1	Uncharacterized protein. (1002 aa)
	A0A1V1TGG1	WD_REPEATS_REGION domain-containing protein. (476 aa)
	A0A1V1TGR4	Uncharacterized protein. (529 aa)
	A0A1V1TGT4	Vezatin domain-containing protein. (628 aa)
	A0A1V1TI87	Amino_oxidase domain-containing protein. (506 aa)
	A0A1V1TJD2	Uncharacterized protein. (378 aa)
	A0A1V1TJI4	Uncharacterized protein. (77 aa)
	A0A1V1TJX3	Uncharacterized protein. (513 aa)
	A0A1V1TKR0	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (615 aa)
	A0A1V1TKS0	Uncharacterized protein. (510 aa)
	A0A1V1TLX6	CULLIN_2 domain-containing protein; Belongs to the cullin family. (851 aa)
	A0A1V1TM11	Uncharacterized protein. (841 aa)
	A0A1V1TM53	Histone domain-containing protein. (325 aa)
	A0A1V1TNC1	Uncharacterized protein. (1181 aa)
	A0A1V1TNL5	Uncharacterized protein. (439 aa)
	A0A1V1TNU5	Uncharacterized protein. (1898 aa)
	A0A1V1TNV5	Uncharacterized protein. (194 aa)
	A0A1V1TP87	AAA domain-containing protein. (1209 aa)
	A0A1V1TPW7	HMG box domain-containing protein. (319 aa)
	A0A1V1TQC4	AAA domain-containing protein. (385 aa)
	A0A1V1TR56	ERCC4 domain-containing protein. (938 aa)
	A0A1V1TSU7	Zds_C domain-containing protein. (917 aa)
	A0A1V1TT14	CYCLIN domain-containing protein; Belongs to the cyclin family. (358 aa)
	A0A1V1TT87	Helicase ATP-binding domain-containing protein. (855 aa)
	A0A1V1TTX1	DNA ligase. (883 aa)
	A0A1V1TVC6	RING-type domain-containing protein. (120 aa)

Your Current Organism:

fungal sp. No14919

NCBI taxonomy Id: 1813822
Other names: f. sp. No.14919, fungal sp. No.14919

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1V1SQD2	A0A1V1SR71	Uncharacterized protein.	Uncharacterized protein.	0.685
A0A1V1SQD2	A0A1V1SRV2	Uncharacterized protein.	Uncharacterized protein.	0.834
A0A1V1SQD2	A0A1V1SV79	Uncharacterized protein.	AAA domain-containing protein.	0.955
A0A1V1SQD2	A0A1V1SVD0	Uncharacterized protein.	Uncharacterized protein.	0.777
A0A1V1SQD2	A0A1V1SVG2	Uncharacterized protein.	Uncharacterized protein.	0.797
A0A1V1SQD2	A0A1V1SXC1	Uncharacterized protein.	Replication factor C subunit 1.	0.804
A0A1V1SQD2	A0A1V1SXD0	Uncharacterized protein.	Helicase ATP-binding domain-containing protein.	0.749
A0A1V1SQD2	A0A1V1SXP5	Uncharacterized protein.	DNA ligase.	0.824
A0A1V1SQD2	A0A1V1SXS2	Uncharacterized protein.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.882
A0A1V1SQD2	A0A1V1SZB8	Uncharacterized protein.	Uncharacterized protein.	0.833
A0A1V1SQD2	A0A1V1T1R7	Uncharacterized protein.	BSD domain-containing protein.	0.696
A0A1V1SQD2	A0A1V1T2M6	Uncharacterized protein.	XPA_C domain-containing protein.	0.951
A0A1V1SQD2	A0A1V1T2U0	Uncharacterized protein.	AAA domain-containing protein.	0.865
A0A1V1SQD2	A0A1V1T374	Uncharacterized protein.	AAA domain-containing protein.	0.905
A0A1V1SQD2	A0A1V1T4E2	Uncharacterized protein.	Amino_oxidase domain-containing protein.	0.745
A0A1V1SQD2	A0A1V1T4L5	Uncharacterized protein.	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	0.744
A0A1V1SQD2	A0A1V1T4R7	Uncharacterized protein.	XPGI domain-containing protein.	0.741
A0A1V1SQD2	A0A1V1T5X9	Uncharacterized protein.	Integrase catalytic domain-containing protein.	0.745
A0A1V1SQD2	A0A1V1T872	Uncharacterized protein.	DNA polymerase.	0.831
A0A1V1SQD2	A0A1V1T8B4	Uncharacterized protein.	DNA_pol_E_B domain-containing protein.	0.809