(5 nodes) Biotin carboxylase, C-terminal network (Panaeolus cyanescens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CVT24_001483	Uncharacterized protein. (2234 aa)
	CVT24_011210	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. (1206 aa)
	CVT24_007086	Uncharacterized protein. (648 aa)
	CVT24_012025	Uncharacterized protein. (1315 aa)
	CVT24_005313	Uncharacterized protein. (1035 aa)

Your Current Organism:

Panaeolus cyanescens

NCBI taxonomy Id: 181874
Other names: Copelandia cyanescens, P. cyanescens

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CVT24_001483	CVT24_005313	A0A409VT93	A0A409Y9K0	Uncharacterized protein.	Uncharacterized protein.	0.824
CVT24_001483	CVT24_007086	A0A409VT93	A0A409YNY4	Uncharacterized protein.	Uncharacterized protein.	0.789
CVT24_001483	CVT24_011210	A0A409VT93	A0A409VHZ9	Uncharacterized protein.	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	0.817
CVT24_001483	CVT24_012025	A0A409VT93	A0A409YNH6	Uncharacterized protein.	Uncharacterized protein.	0.913
CVT24_005313	CVT24_001483	A0A409Y9K0	A0A409VT93	Uncharacterized protein.	Uncharacterized protein.	0.824
CVT24_005313	CVT24_007086	A0A409Y9K0	A0A409YNY4	Uncharacterized protein.	Uncharacterized protein.	0.768
CVT24_005313	CVT24_011210	A0A409Y9K0	A0A409VHZ9	Uncharacterized protein.	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	0.757
CVT24_005313	CVT24_012025	A0A409Y9K0	A0A409YNH6	Uncharacterized protein.	Uncharacterized protein.	0.633
CVT24_007086	CVT24_001483	A0A409YNY4	A0A409VT93	Uncharacterized protein.	Uncharacterized protein.	0.789
CVT24_007086	CVT24_005313	A0A409YNY4	A0A409Y9K0	Uncharacterized protein.	Uncharacterized protein.	0.768
CVT24_007086	CVT24_011210	A0A409YNY4	A0A409VHZ9	Uncharacterized protein.	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	0.848
CVT24_007086	CVT24_012025	A0A409YNY4	A0A409YNH6	Uncharacterized protein.	Uncharacterized protein.	0.857
CVT24_011210	CVT24_001483	A0A409VHZ9	A0A409VT93	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	Uncharacterized protein.	0.817
CVT24_011210	CVT24_005313	A0A409VHZ9	A0A409Y9K0	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	Uncharacterized protein.	0.757
CVT24_011210	CVT24_007086	A0A409VHZ9	A0A409YNY4	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	Uncharacterized protein.	0.848
CVT24_011210	CVT24_012025	A0A409VHZ9	A0A409YNH6	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	Uncharacterized protein.	0.838
CVT24_012025	CVT24_001483	A0A409YNH6	A0A409VT93	Uncharacterized protein.	Uncharacterized protein.	0.913
CVT24_012025	CVT24_005313	A0A409YNH6	A0A409Y9K0	Uncharacterized protein.	Uncharacterized protein.	0.633
CVT24_012025	CVT24_007086	A0A409YNH6	A0A409YNY4	Uncharacterized protein.	Uncharacterized protein.	0.857
CVT24_012025	CVT24_011210	A0A409YNH6	A0A409VHZ9	Uncharacterized protein.	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	0.838