(19 nodes) Class I peroxisomal membrane protein import network (Panaeolus cyanescens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CVT24_009500	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (310 aa)
	CVT24_004750	Uncharacterized protein. (213 aa)
	CVT24_006761	Mitochondrial fission 1 protein; Has a role in mitochondrial fission. (155 aa)
	CVT24_000872	Uncharacterized protein. (249 aa)
	CVT24_006310	Uncharacterized protein. (944 aa)
	CVT24_002186	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (351 aa)
	CVT24_011793	SH3 domain-containing protein. (399 aa)
	CVT24_012325	Uncharacterized protein. (633 aa)
	CVT24_008979	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (471 aa)
	CVT24_001067	Uncharacterized protein. (447 aa)
	CVT24_000196	Uncharacterized protein. (363 aa)
	CVT24_012077	GRIP domain-containing protein. (1332 aa)
	CVT24_001074	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (523 aa)
	CVT24_005043	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family. (420 aa)
	CVT24_003041	Uncharacterized protein. (714 aa)
	CVT24_004280	ABC transporter domain-containing protein. (702 aa)
	CVT24_000539	Peroxisomal membrane protein PEX16. (501 aa)
	CVT24_004449	AAA domain-containing protein; Belongs to the AAA ATPase family. (366 aa)
	CVT24_004919	Pex14_N domain-containing protein. (431 aa)

Your Current Organism:

Panaeolus cyanescens

NCBI taxonomy Id: 181874
Other names: Copelandia cyanescens, P. cyanescens

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CVT24_000196	CVT24_000539	A0A409W361	A0A409VCN3	Uncharacterized protein.	Peroxisomal membrane protein PEX16.	0.962
CVT24_000196	CVT24_000872	A0A409W361	A0A409YCC1	Uncharacterized protein.	Uncharacterized protein.	0.979
CVT24_000196	CVT24_001067	A0A409W361	A0A409W784	Uncharacterized protein.	Uncharacterized protein.	0.957
CVT24_000196	CVT24_001074	A0A409W361	A0A409VX31	Uncharacterized protein.	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.633
CVT24_000196	CVT24_002186	A0A409W361	A0A409YI22	Uncharacterized protein.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.834
CVT24_000196	CVT24_003041	A0A409W361	A0A409VFR0	Uncharacterized protein.	Uncharacterized protein.	0.999
CVT24_000196	CVT24_004280	A0A409W361	A0A409VE18	Uncharacterized protein.	ABC transporter domain-containing protein.	0.863
CVT24_000196	CVT24_004449	A0A409W361	A0A409VC52	Uncharacterized protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.792
CVT24_000196	CVT24_004750	A0A409W361	A0A409V9T3	Uncharacterized protein.	Uncharacterized protein.	0.798
CVT24_000196	CVT24_004919	A0A409W361	A0A409VBR4	Uncharacterized protein.	Pex14_N domain-containing protein.	0.968
CVT24_000196	CVT24_005043	A0A409W361	A0A409VPM5	Uncharacterized protein.	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.633
CVT24_000196	CVT24_006310	A0A409W361	A0A409YEB6	Uncharacterized protein.	Uncharacterized protein.	0.863
CVT24_000196	CVT24_006761	A0A409W361	A0A409V9E5	Uncharacterized protein.	Mitochondrial fission 1 protein; Has a role in mitochondrial fission.	0.839
CVT24_000196	CVT24_008979	A0A409W361	A0A409YAP5	Uncharacterized protein.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.834
CVT24_000196	CVT24_009500	A0A409W361	A0A409VAG9	Uncharacterized protein.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.874
CVT24_000196	CVT24_011793	A0A409W361	A0A409X5N3	Uncharacterized protein.	SH3 domain-containing protein.	0.996
CVT24_000196	CVT24_012077	A0A409W361	A0A409VYK0	Uncharacterized protein.	GRIP domain-containing protein.	0.991
CVT24_000196	CVT24_012325	A0A409W361	A0A409WU91	Uncharacterized protein.	Uncharacterized protein.	0.970
CVT24_000539	CVT24_000196	A0A409VCN3	A0A409W361	Peroxisomal membrane protein PEX16.	Uncharacterized protein.	0.962
CVT24_000539	CVT24_000872	A0A409VCN3	A0A409YCC1	Peroxisomal membrane protein PEX16.	Uncharacterized protein.	0.819