(6 nodes) Aminotransferase class-III network (Panaeolus cyanescens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CVT24_010196	Ornithine aminotransferase. (455 aa)
	CVT24_006290	HECT domain-containing protein. (2481 aa)
	CVT24_009078	Aminotran_1_2 domain-containing protein. (1046 aa)
	CVT24_009318	Uncharacterized protein. (793 aa)
	CVT24_011365	Uncharacterized protein. (151 aa)
	CVT24_001306	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (328 aa)

Your Current Organism:

Panaeolus cyanescens

NCBI taxonomy Id: 181874
Other names: Copelandia cyanescens, P. cyanescens

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CVT24_001306	CVT24_009078	A0A409YYY0	A0A409VDI6	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Aminotran_1_2 domain-containing protein.	0.609
CVT24_001306	CVT24_011365	A0A409YYY0	A0A409YGM1	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Uncharacterized protein.	0.940
CVT24_009078	CVT24_001306	A0A409VDI6	A0A409YYY0	Aminotran_1_2 domain-containing protein.	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.609
CVT24_009078	CVT24_009318	A0A409VDI6	A0A409Y826	Aminotran_1_2 domain-containing protein.	Uncharacterized protein.	0.609
CVT24_009078	CVT24_010196	A0A409VDI6	A0A409YPY0	Aminotran_1_2 domain-containing protein.	Ornithine aminotransferase.	0.437
CVT24_009078	CVT24_011365	A0A409VDI6	A0A409YGM1	Aminotran_1_2 domain-containing protein.	Uncharacterized protein.	0.609
CVT24_009318	CVT24_009078	A0A409Y826	A0A409VDI6	Uncharacterized protein.	Aminotran_1_2 domain-containing protein.	0.609
CVT24_010196	CVT24_009078	A0A409YPY0	A0A409VDI6	Ornithine aminotransferase.	Aminotran_1_2 domain-containing protein.	0.437
CVT24_011365	CVT24_001306	A0A409YGM1	A0A409YYY0	Uncharacterized protein.	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.940
CVT24_011365	CVT24_009078	A0A409YGM1	A0A409VDI6	Uncharacterized protein.	Aminotran_1_2 domain-containing protein.	0.609