(17 nodes) Xylose isomerase-like, TIM barrel domain network (Hungateiclostridiaceae bacterium KB18)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ANU53696.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (302 aa)
	ANU53353.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (283 aa)
	ANU53282.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (295 aa)
	ANU52689.1	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (301 aa)
	ANU52658.1	Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (290 aa)
	ANU52649.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (289 aa)
	ANU52557.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (262 aa)
	ANU55683.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (310 aa)
	ANU55162.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (271 aa)
	ANU55148.1	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (279 aa)
	ANU54662.1	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (323 aa)
	ANU54633.1	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (249 aa)
	ANU54630.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (295 aa)
	ANU54434.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (292 aa)
	ANU54315.2	Sugar phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (243 aa)
	ANU55462.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (288 aa)
	ANU53775.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (274 aa)

Your Current Organism:

Hungateiclostridiaceae bacterium KB18

NCBI taxonomy Id: 1834198
Other names: H. bacterium KB18, Ruminiclostridium sp. KB18

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANU52557.1	ANU53282.1	A4V00_00140	A4V00_04130	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.416
ANU52649.1	ANU53353.1	A4V00_00675	A4V00_04510	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.595
ANU52649.1	ANU53775.1	A4V00_00675	A4V00_06875	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.694
ANU52649.1	ANU54315.2	A4V00_00675	A4V00_09935	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.641
ANU52649.1	ANU54434.1	A4V00_00675	A4V00_10635	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.535
ANU52649.1	ANU54633.1	A4V00_00675	A4V00_11790	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.567
ANU52649.1	ANU54662.1	A4V00_00675	A4V00_11945	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.644
ANU52649.1	ANU55148.1	A4V00_00675	A4V00_14635	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.794
ANU52649.1	ANU55162.1	A4V00_00675	A4V00_14710	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.482
ANU52649.1	ANU55462.1	A4V00_00675	A4V00_16395	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.540
ANU52649.1	ANU55683.1	A4V00_00675	A4V00_17615	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.560
ANU53282.1	ANU52557.1	A4V00_04130	A4V00_00140	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.416
ANU53282.1	ANU53353.1	A4V00_04130	A4V00_04510	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.487
ANU53282.1	ANU53696.1	A4V00_04130	A4V00_06460	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.694
ANU53282.1	ANU53775.1	A4V00_04130	A4V00_06875	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.958
ANU53282.1	ANU54315.2	A4V00_04130	A4V00_09935	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.489
ANU53282.1	ANU54434.1	A4V00_04130	A4V00_10635	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.620
ANU53282.1	ANU54630.1	A4V00_04130	A4V00_11775	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.483
ANU53282.1	ANU54633.1	A4V00_04130	A4V00_11790	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.597
ANU53282.1	ANU55148.1	A4V00_04130	A4V00_14635	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.936