(11 nodes) RNA polymerase sigma factor 54 interaction domain network (Erysipelotrichaceae bacterium I46)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ANU71331.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (923 aa)
	ANU67510.1	AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (909 aa)
	ANU67546.1	Sugar lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (811 aa)
	ANU67629.1	RNA polymerase subunit sigma-54; Derived by automated computational analysis using gene prediction method: Protein Homology. (137 aa)
	ANU67933.1	Sugar lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (896 aa)
	ANU67989.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (937 aa)
	ANU68283.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (910 aa)
	ANU68289.1	Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (807 aa)
	ANU68496.1	Sugar lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (905 aa)
	ANU70919.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (903 aa)
	ANU71256.1	RNA polymerase subunit sigma-54; Derived by automated computational analysis using gene prediction method: Protein Homology. (918 aa)

Your Current Organism:

Erysipelotrichaceae bacterium I46

NCBI taxonomy Id: 1834207
Other names: E. bacterium I46

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANU67546.1	ANU67629.1	A4V01_00645	A4V01_01085	Sugar lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase subunit sigma-54; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.784
ANU67546.1	ANU67989.1	A4V01_00645	A4V01_03080	Sugar lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.407
ANU67629.1	ANU67546.1	A4V01_01085	A4V01_00645	RNA polymerase subunit sigma-54; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.784
ANU67933.1	ANU67989.1	A4V01_02755	A4V01_03080	Sugar lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.404
ANU67989.1	ANU67546.1	A4V01_03080	A4V01_00645	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.407
ANU67989.1	ANU67933.1	A4V01_03080	A4V01_02755	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.404
ANU67989.1	ANU68289.1	A4V01_03080	A4V01_04710	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.405
ANU67989.1	ANU68496.1	A4V01_03080	A4V01_05840	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.401
ANU67989.1	ANU71256.1	A4V01_03080	A4V01_21190	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase subunit sigma-54; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.401
ANU68289.1	ANU67989.1	A4V01_04710	A4V01_03080	Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.405
ANU68496.1	ANU67989.1	A4V01_05840	A4V01_03080	Sugar lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.401
ANU71256.1	ANU67989.1	A4V01_21190	A4V01_03080	RNA polymerase subunit sigma-54; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.401