STRINGSTRING
ENSSLDP00000000573 ENSSLDP00000000573 LOC111666869 LOC111666869 LOC111656677 LOC111656677 ssrp1 ssrp1 IWS1 IWS1 LOC111670156 LOC111670156 polr2g polr2g ENSSLDP00000002558 ENSSLDP00000002558 paf1 paf1 tcea2 tcea2 polr2h polr2h cdk12 cdk12 LOC111659175 LOC111659175 LOC111662240 LOC111662240 ccnk ccnk polr2c polr2c ENSSLDP00000004562 ENSSLDP00000004562 ctdp1 ctdp1 ENSSLDP00000005360 ENSSLDP00000005360 ENSSLDP00000005439 ENSSLDP00000005439 snapc1 snapc1 LOC111646012 LOC111646012 nelfcd nelfcd POLR2E POLR2E nelfa nelfa ENSSLDP00000006880 ENSSLDP00000006880 mllt1 mllt1 LOC111656821 LOC111656821 znf512 znf512 gtf3c2 gtf3c2 aff4 aff4 GTF3C1 GTF3C1 supt5h supt5h eaf2 eaf2 supt16h supt16h sidt2 sidt2 gtf2f1 gtf2f1 rrn3 rrn3 polr2i polr2i nelfb nelfb polr3d polr3d rtf1 rtf1 leo1 leo1 CCNK CCNK polr3k polr3k polr3f polr3f eepd1 eepd1 twistnb twistnb gtf3c3 gtf3c3 gtf3c4 gtf3c4 eaf1 eaf1 gtf3c5 gtf3c5 LOC111659884 LOC111659884 polr2k polr2k mllt3 mllt3 LOC111668070 LOC111668070 supt6h supt6h ENSSLDP00000019420 ENSSLDP00000019420 POLR1B POLR1B tcea1 tcea1 polr3c polr3c znrd1 znrd1 brf2 brf2 LOC111664401 LOC111664401 crcp crcp tcea3 tcea3 ELOF1 ELOF1 polr2b polr2b ENSSLDP00000021689 ENSSLDP00000021689 LOC111650957 LOC111650957 LOC111665022 LOC111665022 polr3e polr3e cdk9 cdk9 tceanc2 tceanc2 ell2 ell2 polr3h polr3h polr1c polr1c ell ell Eloa Eloa cinp cinp cdc73 cdc73 supt4h1 supt4h1 cdk13 cdk13 polr2a polr2a polr3g polr3g Polr1b Polr1b maf1 maf1 LOC111667384 LOC111667384 ctr9 ctr9 LOC111644645 LOC111644645 polr2j polr2j ENSSLDP00000029588 ENSSLDP00000029588 polr3b polr3b srbd1 srbd1 snapc3 snapc3 snapc5 snapc5 LOC111646446 LOC111646446 polr3a polr3a polr2l polr2l tbp tbp polr1a polr1a nelfe nelfe polr2d polr2d LOC111667059 LOC111667059 polr2f polr2f polr1e polr1e znf512b znf512b pou2f2 pou2f2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ENSSLDP00000000573BRF1 RNA polymerase III transcription initiation factor subunit b. (728 aa)
LOC111666869Si:ch211-13k12.2. (599 aa)
LOC111656677Elongin A, like. (580 aa)
ssrp1FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (702 aa)
IWS1Interacts with SUPT6H, CTD assembly factor 1. (557 aa)
LOC111670156Uncharacterized protein. (622 aa)
polr2gPolymerase (RNA) II (DNA directed) polypeptide G-like. (172 aa)
ENSSLDP00000002558Protein kinase domain-containing protein. (298 aa)
paf1PAF1 homolog, Paf1/RNA polymerase II complex component. (525 aa)
tcea2Transcription elongation factor A (SII), 2. (302 aa)
polr2hDNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
cdk12Cyclin-dependent kinase 12. (1360 aa)
LOC111659175Uncharacterized protein. (610 aa)
LOC111662240CD3e molecule, epsilon associated protein. (343 aa)
ccnkCyclin K; Belongs to the cyclin family. (553 aa)
polr2cPolymerase (RNA) II (DNA directed) polypeptide C. (275 aa)
ENSSLDP00000004562RPA43_OB domain-containing protein. (311 aa)
ctdp1CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1. (1009 aa)
ENSSLDP00000005360Uncharacterized protein. (262 aa)
ENSSLDP00000005439TFIIS central domain-containing protein. (179 aa)
snapc1Small nuclear RNA activating complex, polypeptide 1b. (353 aa)
LOC111646012Cyclin T2b; Belongs to the cyclin family. (553 aa)
nelfcdNegative elongation factor complex member C/D. (579 aa)
POLR2ERNA polymerase II subunit E. (210 aa)
nelfaNegative elongation factor complex member A. (547 aa)
ENSSLDP00000006880Uncharacterized protein. (201 aa)
mllt1MLLT1 super elongation complex subunit a. (593 aa)
LOC111656821Uncharacterized protein. (1206 aa)
znf512Zinc finger protein 512. (894 aa)
gtf3c2General transcription factor IIIC, polypeptide 2, beta. (959 aa)
aff4AF4/FMR2 family, member 4. (1155 aa)
GTF3C1General transcription factor IIIC subunit 1. (1752 aa)
supt5hTranscription elongation factor SPT5. (1084 aa)
eaf2ELL associated factor 2. (266 aa)
supt16hSPT16 homolog, facilitates chromatin remodeling subunit. (1031 aa)
sidt2SID1 transmembrane family, member 2. (874 aa)
gtf2f1Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (516 aa)
rrn3RRN3 homolog, RNA polymerase I transcription factor. (612 aa)
polr2iDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
nelfbNegative elongation factor complex member B. (583 aa)
polr3dPolymerase (RNA) III (DNA directed) polypeptide D. (387 aa)
rtf1RTF1 homolog, Paf1/RNA polymerase II complex component. (677 aa)
leo1LEO1 homolog, Paf1/RNA polymerase II complex component. (636 aa)
CCNKCyclin K; Belongs to the cyclin family. (478 aa)
polr3kDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (108 aa)
polr3fDNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (316 aa)
eepd1Endonuclease/exonuclease/phosphatase family domain containing 1. (555 aa)
twistnbUncharacterized protein. (380 aa)
gtf3c3General transcription factor IIIC, polypeptide 3. (821 aa)
gtf3c4General transcription factor IIIC, polypeptide 4. (776 aa)
eaf1ELL associated factor 1. (259 aa)
gtf3c5General transcription factor IIIC, polypeptide 5. (531 aa)
LOC111659884BRF1 RNA polymerase III transcription initiation factor subunit. (697 aa)
polr2kPolymerase (RNA) II (DNA directed) polypeptide K. (58 aa)
mllt3MLLT3 super elongation complex subunit. (540 aa)
LOC111668070SANT domain-containing protein. (2591 aa)
supt6hTranscription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1649 aa)
ENSSLDP00000019420EAF domain-containing protein. (80 aa)
POLR1BRNA polymerase I subunit B; Belongs to the RNA polymerase beta chain family. (516 aa)
tcea1Transcription elongation factor A (SII), 1. (310 aa)
polr3cRNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (566 aa)
znrd1DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (118 aa)
brf2BRF2 RNA polymerase III transcription initiation factor subunit. (451 aa)
LOC111664401Zgc:171971. (404 aa)
crcpCalcitonin gene-related peptide-receptor component protein. (147 aa)
tcea3Transcription elongation factor A (SII), 3. (369 aa)
ELOF1Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family. (83 aa)
polr2bDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1174 aa)
ENSSLDP00000021689Uncharacterized protein. (167 aa)
LOC111650957Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family. (83 aa)
LOC111665022Uncharacterized protein. (1041 aa)
polr3ePolymerase (RNA) III (DNA directed) polypeptide E. (699 aa)
cdk9Cyclin-dependent kinase 9 (CDC2-related kinase); Belongs to the protein kinase superfamily. (374 aa)
tceanc2Uncharacterized protein. (207 aa)
ell2Elongation factor, RNA polymerase II, 2. (626 aa)
polr3hPolymerase (RNA) III (DNA directed) polypeptide H. (215 aa)
polr1cRNA polymerase I and III subunit C. (384 aa)
ellElongation factor RNA polymerase II. (564 aa)
EloaElongin A. (219 aa)
cinpCyclin-dependent kinase 2 interacting protein. (220 aa)
cdc73Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae). (530 aa)
supt4h1Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family. (117 aa)
cdk13Cyclin-dependent kinase 13. (1419 aa)
polr2aDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1966 aa)
polr3gDNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. (212 aa)
Polr1bRNA_pol_Rpb2_1 domain-containing protein. (154 aa)
maf1Repressor of RNA polymerase III transcription MAF1; Element of the TORC1 signaling pathway that acts as a mediator of diverse signals and that represses RNA polymerase III transcription. Inhibits the de novo assembly of TFIIIB onto DNA. Belongs to the MAF1 family. (246 aa)
LOC111667384Cyclin T2; Belongs to the cyclin family. (712 aa)
ctr9CTR9 homolog, Paf1/RNA polymerase II complex component. (1163 aa)
LOC111644645Uncharacterized protein. (361 aa)
polr2jPolymerase (RNA) II (DNA directed) polypeptide J. (117 aa)
ENSSLDP00000029588Uncharacterized protein. (110 aa)
polr3bDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1132 aa)
srbd1S1 RNA binding domain 1. (1011 aa)
snapc3Small nuclear RNA activating complex, polypeptide 3. (382 aa)
snapc5Small nuclear RNA activating complex, polypeptide 5. (119 aa)
LOC111646446RNA polymerase I and III subunit D. (118 aa)
polr3aDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1402 aa)
polr2lPolymerase (RNA) II (DNA directed) polypeptide L. (67 aa)
tbpTATA box binding protein. (253 aa)
polr1aDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1635 aa)
nelfeNegative elongation factor complex member E. (344 aa)
polr2dPolymerase (RNA) II (DNA directed) polypeptide D. (145 aa)
LOC111667059Interactor of little elongator complex ELL subunit 2. (944 aa)
polr2fPolymerase (RNA) II (DNA directed) polypeptide F. (127 aa)
polr1eRNA polymerase I subunit E. (420 aa)
znf512bZinc finger protein 512B. (738 aa)
pou2f2POU domain protein. (440 aa)
Your Current Organism:
Seriola lalandi
NCBI taxonomy Id: 1841481
Other names: S. lalandi dorsalis, Seriola dorsalis, Seriola lalandi dorsalis
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