(55 nodes) Nuclear pore, and Annulate lamellae network (Seriola lalandi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ran	GTP-binding nuclear protein Ran; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family. (215 aa)
	snupn	Snurportin 1. (372 aa)
	nup188	Nucleoporin 188. (1751 aa)
	LOC111644848	RanBD1 domain-containing protein. (129 aa)
	ENSSLDP00000004150	Uncharacterized protein. (78 aa)
	Nup88	Uncharacterized protein. (89 aa)
	nup37	Nucleoporin 37. (325 aa)
	ENSSLDP00000006750	Uncharacterized protein. (105 aa)
	ENSSLDP00000006781	Nucleoporin 88. (447 aa)
	tpr	Translocated promoter region b, nuclear basket protein. (2223 aa)
	nup42	Nucleoporin 42. (500 aa)
	LOC111673333	Adhesion G protein-coupled receptor B2; Belongs to the G-protein coupled receptor 2 family. (1758 aa)
	NUP54	Nucleoporin 54. (582 aa)
	NUP214	Nucleoporin 214. (2000 aa)
	ncoa5	Nuclear receptor coactivator 5. (650 aa)
	aaas	Achalasia, adrenocortical insufficiency, alacrimia. (519 aa)
	LOC111646130	Ran GTPase activating protein 1b. (544 aa)
	nup58	Nucleoporin 58. (569 aa)
	nup155	Nucleoporin 155. (1348 aa)
	ENSSLDP00000014091	RanBD1 domain-containing protein. (113 aa)
	nup210	Nucleoporin 210. (1882 aa)
	rae1	Ribonucleic acid export 1. (368 aa)
	nup160	Nucleoporin 160. (1190 aa)
	nup153	Nucleoporin 153. (1448 aa)
	ENSSLDP00000016055	Uncharacterized protein. (306 aa)
	nup205	Nucleoporin 205. (1679 aa)
	NUP62	Nucleoporin 62. (629 aa)
	nup98	Nucleoporin 98. (1775 aa)
	LOC111657633	Adhesion G protein-coupled receptor B1b; Belongs to the G-protein coupled receptor 2 family. (1100 aa)
	ENSSLDP00000017342	Uncharacterized protein. (283 aa)
	adgrd1	Adhesion G protein-coupled receptor D1; Belongs to the G-protein coupled receptor 2 family. (808 aa)
	nup93	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family. (789 aa)
	LOC111666119	Uncharacterized protein. (425 aa)
	ENSSLDP00000020263	Uncharacterized protein. (73 aa)
	ranbp1	RAN binding protein 1. (220 aa)
	rcc1	Regulator of chromosome condensation 1. (418 aa)
	nup107	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (907 aa)
	tnpo3	Transportin 3. (923 aa)
	ENSSLDP00000022281	Exportin 1 (CRM1 homolog, yeast) a. (310 aa)
	ENSSLDP00000022307	Exportin 1 (CRM1 homolog, yeast) a. (580 aa)
	ndc1	NDC1 transmembrane nucleoporin. (676 aa)
	nup35	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family. (292 aa)
	rangap1	RAN GTPase activating protein 1a. (560 aa)
	nup50	Nucleoporin 50. (395 aa)
	xpot	Exportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family. (971 aa)
	LOC111669467	Exportin 1 (CRM1 homolog, yeast) b. (1071 aa)
	adgrb3	Adhesion G protein-coupled receptor B3; Belongs to the G-protein coupled receptor 2 family. (1531 aa)
	xpo5	Exportin 5. (1150 aa)
	nup43	Nucleoporin 43. (372 aa)
	kpnb1	Karyopherin (importin) beta 1. (884 aa)
	LOC111653432	Translocated promoter region a, nuclear basket protein. (2017 aa)
	LOC111662719	RAN binding protein 2. (2916 aa)
	ahctf1	AT hook containing transcription factor 1. (2486 aa)
	gle1	GLE1 RNA export mediator. (721 aa)
	nup85	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (614 aa)

Your Current Organism:

Seriola lalandi

NCBI taxonomy Id: 1841481
Other names: S. lalandi dorsalis, Seriola dorsalis, Seriola lalandi dorsalis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSLDP00000004150	ENSSLDP00000014091	ENSSLDP00000004150	ENSSLDP00000014091	Uncharacterized protein.	RanBD1 domain-containing protein.	0.867
ENSSLDP00000004150	ENSSLDP00000017342	ENSSLDP00000004150	ENSSLDP00000017342	Uncharacterized protein.	Uncharacterized protein.	0.567
ENSSLDP00000004150	ENSSLDP00000020263	ENSSLDP00000004150	ENSSLDP00000020263	Uncharacterized protein.	Uncharacterized protein.	0.409
ENSSLDP00000004150	LOC111644848	ENSSLDP00000004150	ENSSLDP00000002245	Uncharacterized protein.	RanBD1 domain-containing protein.	0.715
ENSSLDP00000004150	LOC111646130	ENSSLDP00000004150	ENSSLDP00000012266	Uncharacterized protein.	Ran GTPase activating protein 1b.	0.606
ENSSLDP00000004150	LOC111657633	ENSSLDP00000004150	ENSSLDP00000017316	Uncharacterized protein.	Adhesion G protein-coupled receptor B1b; Belongs to the G-protein coupled receptor 2 family.	0.567
ENSSLDP00000004150	LOC111662719	ENSSLDP00000004150	ENSSLDP00000030658	Uncharacterized protein.	RAN binding protein 2.	0.867
ENSSLDP00000004150	LOC111666119	ENSSLDP00000004150	ENSSLDP00000019060	Uncharacterized protein.	Uncharacterized protein.	0.505
ENSSLDP00000004150	LOC111673333	ENSSLDP00000004150	ENSSLDP00000008436	Uncharacterized protein.	Adhesion G protein-coupled receptor B2; Belongs to the G-protein coupled receptor 2 family.	0.567
ENSSLDP00000004150	NUP214	ENSSLDP00000004150	ENSSLDP00000009941	Uncharacterized protein.	Nucleoporin 214.	0.930
ENSSLDP00000004150	NUP54	ENSSLDP00000004150	ENSSLDP00000008456	Uncharacterized protein.	Nucleoporin 54.	0.483
ENSSLDP00000004150	adgrb3	ENSSLDP00000004150	ENSSLDP00000025199	Uncharacterized protein.	Adhesion G protein-coupled receptor B3; Belongs to the G-protein coupled receptor 2 family.	0.567
ENSSLDP00000004150	adgrd1	ENSSLDP00000004150	ENSSLDP00000017828	Uncharacterized protein.	Adhesion G protein-coupled receptor D1; Belongs to the G-protein coupled receptor 2 family.	0.815
ENSSLDP00000004150	kpnb1	ENSSLDP00000004150	ENSSLDP00000027819	Uncharacterized protein.	Karyopherin (importin) beta 1.	0.441
ENSSLDP00000004150	ncoa5	ENSSLDP00000004150	ENSSLDP00000010856	Uncharacterized protein.	Nuclear receptor coactivator 5.	0.505
ENSSLDP00000004150	nup153	ENSSLDP00000004150	ENSSLDP00000016027	Uncharacterized protein.	Nucleoporin 153.	0.440
ENSSLDP00000004150	nup155	ENSSLDP00000004150	ENSSLDP00000013982	Uncharacterized protein.	Nucleoporin 155.	0.430
ENSSLDP00000004150	nup98	ENSSLDP00000004150	ENSSLDP00000016869	Uncharacterized protein.	Nucleoporin 98.	0.717
ENSSLDP00000004150	rae1	ENSSLDP00000004150	ENSSLDP00000014724	Uncharacterized protein.	Ribonucleic acid export 1.	0.462
ENSSLDP00000004150	ran	ENSSLDP00000004150	ENSSLDP00000001645	Uncharacterized protein.	GTP-binding nuclear protein Ran; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.815