5 items (Seriola lalandi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rapgef6	Rap guanine nucleotide exchange factor (GEF) 6. (1545 aa)
	LOC111661945	Uncharacterized protein. (185 aa)
	LOC111661323	Uncharacterized protein. (184 aa)
	LOC111650973	RAP1A, member of RAS oncogene family b. (185 aa)
	LOC111671130	Zgc:171558. (976 aa)

Your Current Organism:

Seriola lalandi

NCBI taxonomy Id: 1841481
Other names: S. lalandi dorsalis, Seriola dorsalis, Seriola lalandi dorsalis

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC111650973	LOC111661323	ENSSLDP00000021876	ENSSLDP00000021781	RAP1A, member of RAS oncogene family b.	Uncharacterized protein.	0.900
LOC111650973	LOC111661945	ENSSLDP00000021876	ENSSLDP00000016623	RAP1A, member of RAS oncogene family b.	Uncharacterized protein.	0.900
LOC111650973	LOC111671130	ENSSLDP00000021876	ENSSLDP00000025715	RAP1A, member of RAS oncogene family b.	Zgc:171558.	0.841
LOC111650973	rapgef6	ENSSLDP00000021876	ENSSLDP00000008107	RAP1A, member of RAS oncogene family b.	Rap guanine nucleotide exchange factor (GEF) 6.	0.946
LOC111661323	LOC111650973	ENSSLDP00000021781	ENSSLDP00000021876	Uncharacterized protein.	RAP1A, member of RAS oncogene family b.	0.900
LOC111661323	LOC111661945	ENSSLDP00000021781	ENSSLDP00000016623	Uncharacterized protein.	Uncharacterized protein.	0.900
LOC111661323	LOC111671130	ENSSLDP00000021781	ENSSLDP00000025715	Uncharacterized protein.	Zgc:171558.	0.841
LOC111661323	rapgef6	ENSSLDP00000021781	ENSSLDP00000008107	Uncharacterized protein.	Rap guanine nucleotide exchange factor (GEF) 6.	0.488
LOC111661945	LOC111650973	ENSSLDP00000016623	ENSSLDP00000021876	Uncharacterized protein.	RAP1A, member of RAS oncogene family b.	0.900
LOC111661945	LOC111661323	ENSSLDP00000016623	ENSSLDP00000021781	Uncharacterized protein.	Uncharacterized protein.	0.900
LOC111661945	LOC111671130	ENSSLDP00000016623	ENSSLDP00000025715	Uncharacterized protein.	Zgc:171558.	0.841
LOC111661945	rapgef6	ENSSLDP00000016623	ENSSLDP00000008107	Uncharacterized protein.	Rap guanine nucleotide exchange factor (GEF) 6.	0.946
LOC111671130	LOC111650973	ENSSLDP00000025715	ENSSLDP00000021876	Zgc:171558.	RAP1A, member of RAS oncogene family b.	0.841
LOC111671130	LOC111661323	ENSSLDP00000025715	ENSSLDP00000021781	Zgc:171558.	Uncharacterized protein.	0.841
LOC111671130	LOC111661945	ENSSLDP00000025715	ENSSLDP00000016623	Zgc:171558.	Uncharacterized protein.	0.841
rapgef6	LOC111650973	ENSSLDP00000008107	ENSSLDP00000021876	Rap guanine nucleotide exchange factor (GEF) 6.	RAP1A, member of RAS oncogene family b.	0.946
rapgef6	LOC111661323	ENSSLDP00000008107	ENSSLDP00000021781	Rap guanine nucleotide exchange factor (GEF) 6.	Uncharacterized protein.	0.488
rapgef6	LOC111661945	ENSSLDP00000008107	ENSSLDP00000016623	Rap guanine nucleotide exchange factor (GEF) 6.	Uncharacterized protein.	0.946